Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq10212 212 1e-50 >seq10212 Length=656 Score = 212 bits (234), Expect = 1e-50 Identities = 434/642 (68%), Gaps = 10/642 (2%) Strand=Plus/Minus Query 23977 TGCATATCAATTTGTGACCACGCTAAATTAATGATATTTGAACGACGTAACCCGGTTGCC 24036 |||||||| ||||| ||||| || | | || || || || ||||| | || || | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 24037 AGCGCAAATTCAACCGTCGATCTAAGGGGTTCAGGACATTCATTGATTAATCTTTCTGCT 24096 || ||||||||||| || ||| |||| ||||| || || |||| | ||| | || ||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 24097 TCATCCGGTTCTAACCATCTAATACGTTTTTCTCTAGCCGATGGAACCTTAATAACCGGT 24156 | | | ||||| | ||| | || || || | ||| || || ||||| || || ||| Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 24157 GATTTTTCTATCCATTTCCAATCTCTTTCAGCAGATTTCATCATTGATTTAAGTAGTGCC 24216 || ||||||||||| |||||||| ||||| |||| ||| | | || | | || Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 24217 AAATGCTTAGCTTTTGTTGCTATAGAAACTTCTTTCGCTTGATAAGCGG--GTATTTCTA 24274 | |||||||| ||||||| | ||||| | | | || | |||| |||| | | Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATT--TTCGCGGCGGTATCACAA 357 Query 24275 TTCCTTTTCTTTTTGC---TGAATTAACTCTACTTTTCCATCTTAATTGTTCCTGCCTAT 24331 | ||||| || || || || ||| | ||| ||| | | | ||| ||||| Sbjct 356 TGCCTTTC---TTAGCCATTGCATCAACACGCATTTGCCAGCGCTCCTCTGCCTTCCTAT 300 Query 24332 TTTTCATTTTGCTAATAGCACTATATATTTTTGCTTCTGTCATATCTTTTAATCGGGTAC 24391 | |||| ||||| || | || |||||||| || || ||||| || ||| | Sbjct 299 TGGTCATGCGGCTAACTGCGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATAAAACCC 240 Query 24392 CGCTGAAATACAGTAGCCAAAAACCAAGTCTACCCTTGTCATCGTCTAAAGATTTCTTGT 24451 | |||| || ||||| || |||| | |||||||| | || | |||||||||| Sbjct 239 CCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATTTCTTGT 180 Query 24452 TAGCCTTCTCTTCAATCCATCTCAAGCAGGCTTCGTCAAATGTGACATTAGGAAAATCAT 24511 || || ||||| | ||| | || ||| || || |||||||| ||||| || || || Sbjct 179 GCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCACATTCGGGAAGTCCC 120 Query 24512 CTAACTTTGCTATTCTCCATAATTCAGCTCTTCGTTTGTCGTGTAACTCCTGAGCTTGTT 24571 | || |||||||||| | ||||||| ||| |||||| | |||||| ||||| Sbjct 119 CCAAACGCTCTATTCTCCAAAGTTCAGCTTTTCTACGGTCGTGCAGCTCCTGCGCTTGGC 60 Query 24572 TTTTGTCCTCTGTGCCAAGTGATTCCTTAATTCTTTTTCCGC 24613 | ||||| || ||||| ||||||||||||| || |||| Sbjct 59 GTCTGTCCGAAGTCCCAAGCGATTCCTTAATTCGCTTGCCGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116734595699052