Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq9046 113 5e-20 seq5 102 1e-16 >seq9046 Length=208 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 145802 TGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCC 145861 |||||||||| || || || ||| || |||||||| || ||||||||||| | | | Sbjct 208 TGAAGGGCACGCCGAGGAACACGTCGCCGGAGCGCTGATAGAGCTGGCAGGACAATTTTC 149 Query 145862 CGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGT 145921 || || || ||||||||| ||||| |||||| |||||||| ||||| | || | Sbjct 148 CGTTGGCGACATAGAACTGGAACAGGCAGTGGCACGGCGGCAGCGCCATCTTGTCCACCT 89 Query 145922 CCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCC 145981 | ||||| ||||||||| ||| || |||| || || || || | ||||||| | Sbjct 88 CGGCCGGATTCCAGGCGCTGACGATCAGCCGCCGCGAGTCCGGATTGCGCTTGATCATCT 29 Query 145982 CTATCAGGTCCCTGAGCTGGTC 146003 | |||| || |||| |||||| Sbjct 28 CGATCACGTTGCTGATCTGGTC 7 >seq5 Length=2401786 Score = 102 bits (112), Expect = 1e-16 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 145689 CTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTC 145748 ||| |||||||| |||||| |||| || ||||| || ||| ||||| |||| || | Sbjct 2111827 CTCGACGTGGTTCGAGTAGACATGCGTGTTCCCCATGAAGTGAATGAACTCCCTAGGTTT 2111886 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| || ||| || |||||| |||| || || ||| || ||||||||||| Sbjct 2111887 TAGGTTGCAGACGTGTGCAACCATGAGCGTCAAAAGCGAATAGGAAGCAATGTTGAAGGG 2111946 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTC---CCCGCC 145865 || || || || | || | ||| ||||| |||| |||||| | ||| | | | Sbjct 2111947 GACGCCGAGGCCGACATCGCACGACCGCTGATACATGATGCAGGACAACTCTTTCTGGTC 2112006 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||| |||| | |||||| |||||||| ||||| Sbjct 2112007 GTTCACGTAGAACTGACACAACAAGTGGCAAGGCGGCAGAGCCAT 2112051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967185858440