Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq14564 120 3e-22 seq14858 118 9e-22 seq14857 89.7 4e-13 >seq14564 Length=527 Score = 120 bits (132), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 102784 CCATGCGGATACGCCCTTTTGCGGCTTT-TGTATGGCGGCCCACGGGTCGTGGATAGCGA 102842 ||| |||| ||||||||||| | |||| || | ||||| |||| |||||||| | | Sbjct 527 CCAGGCGGTAACGCCCTTTTG-GCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACA 469 Query 102843 CCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGG 102902 | |||||||| | ||||| | ||| || ||||||| ||| | || || || || Sbjct 468 CTTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCT 409 Query 102903 TCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGAT 102962 || || |||||| | || || ||||| || |||||||| || |||||||||| || Sbjct 408 CTTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAAT 349 Query 102963 GGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGCCGCGGCCGTACACGCCCCACT 103022 | | |||||| || ||||| || || || | || |||||||| |||||||| | Sbjct 348 GCGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATT 289 Query 103023 CTACGAAATA 103032 | || ||||| Sbjct 288 CCACAAAATA 279 >seq14858 Length=1827956 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| |||||||| |||||||| ||||| | ||| ||| || |||||||| Sbjct 1580265 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 1580206 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| ||||| ||| |||| || | |||||| || ||| | ||||||||||| | Sbjct 1580205 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 1580146 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| ||||| | ||| || || ||||| || | || |||||||| Sbjct 1580145 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTT 1580086 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| | || || ||||| || ||||||||| Sbjct 1580085 CCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 1580053 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| |||||||| |||||||| ||||| | ||| ||| || |||||||| Sbjct 1580894 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 1580835 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| ||||| ||| |||| || | |||||| || ||| | ||||||||||| | Sbjct 1580834 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 1580775 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| ||||| | ||| || || ||||| || | || |||||||| Sbjct 1580774 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTT 1580715 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| | || || ||||| || |||||| Sbjct 1580714 CCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| |||||||| |||||||| ||||| | ||| ||| || |||| ||| Sbjct 1581122 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCC 1581063 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| ||||| ||| |||| || | |||||| || ||| | ||||||||||| | Sbjct 1581062 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 1581003 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| ||||| | ||| || || ||||| || | || |||||||| Sbjct 1581002 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTT 1580943 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| | || || ||||| || |||||| Sbjct 1580942 CCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| |||||||| |||||||| ||||| | ||| ||| || |||||||| Sbjct 1581646 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 1581587 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| ||||| ||| |||| || | |||||| || ||| | ||||||||||| | Sbjct 1581586 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 1581527 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| ||||| | ||| || || ||||| || | || || ||||| Sbjct 1581526 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTT 1581467 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| | || || ||||| || |||||| Sbjct 1581466 CCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 >seq14857 Length=2032611 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | |||||| ||||| || ||||| ||||| | |||||| | ||||||| Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 1173480 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| ||||| || | || || | ||||||||| || | || ||||| || Sbjct 1173479 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 1173420 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||| || || | ||| || ||| ||||| |||| || || ||||| Sbjct 1173419 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 1173360 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||| | ||| || || || || ||||||||| Sbjct 1173359 GCCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 1173326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422182721073476