Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq9290 156 1e-33 >seq9290 Length=604 Score = 156 bits (172), Expect = 1e-33 Identities = 383/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Plus Query 13494 CTGACGGTGGCGAACCTCGACAGCTCTATCTCGGCGCTCTGTCTGGCGTATGACGATCTG 13553 || ||||| || ||||| || | | ||| | ||||| || || || ||| ||| || Sbjct 32 CTAACGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATG 91 Query 13554 CTGCAGGCGAAAGTCACTATCCATGACACGCTGGCGAAGTATCTGGATGCCAGAAACTTT 13613 |||||| ||||| ||||| || ||| ||| | ||||||||||| | || ||| Sbjct 92 GCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTT 151 Query 13614 CCGCAGGGTAACCCCACCGCAGATCCGTCACAGGAAAAGCTGAAGGTCTTTTATATTGA- 13672 || | || ||||| || || |||||| ||||||||||||| ||||||| || || || Sbjct 152 CCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGAT 211 Query 13673 CGCCAGAAACACCGAGACGGATGAAGTGGTGGAATTTATCCTTTCCAGCCCGATGGATTT 13732 || || | || || | |||||| ||| || ||| || || || ||| || | Sbjct 212 CGTAAGGCA-ACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCT 270 Query 13733 ACAGGGCCGGATGATACCGACCCGGCAGCTGCATTCTCTGTGTTCCTGGTGCATCCGGAA 13792 | ||| | || ||||||||||| | ||| || ||| ||||||| ||| Sbjct 271 TCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGG 330 Query 13793 CAAATACCGAACCGGCGACGGCTGCGACTACGCCGGAACGCGCTATTT---CGACAAGCA 13849 | ||||||||||| | |||||||| || ||||| || || ||||| ||||||| Sbjct 331 CTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGG 390 Query 13850 CAATAACCCTGTTGACGATCCTTCGCTGGATGAATGCAACGGTACGCTGACGGCCTG-CA 13908 |||| || ||||||||||| ||| ||| ||| ||||| | || || Sbjct 391 CAAT---CCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCTGCTGAGTGATTGCCA 447 Query 13909 AGCTGCGTCATGGAGACAGCAACGAGC---TGCCGTTCGGCGGTTTCCCCGGTACATCCC 13965 | ||| ||| || ||||||| | |||||||| || |||||||| | || Sbjct 448 AAAAACGTTTTGGTGA---TAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCAT 504 Query 13966 TTATC--------AGGAGCTGAT--ATGCGCCAGAAAACCATTGATGCCATCATGGCGCA 14015 | ||| || | ||| ||| |||||||||| | ||||| |||||||| Sbjct 505 TGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCA 564 Query 14016 CGCCGCTGCGGAATATCCGCGCGAGTGCTGCGGC 14049 || | || || |||||||| ||||| |||||| Sbjct 565 TGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGGC 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148252232662034