Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14564 102 7e-17 >seq14564 Length=527 Score = 102 bits (112), Expect = 7e-17 Identities = 172/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 98000 CCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAAC 98059 ||| |||| |||||||||||| ||| || | ||||| ||||||||||||| | || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 98060 TTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGT 98119 ||| || || || || ||| ||| || || |||| || | || || || || Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 98120 TTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTG 98179 ||| || |||||| || ||||| || || ||||| || || || ||||||| ||| || Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 98180 CGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTC 98239 || | ||| || || | || || |||| || | || ||||| || ||||| || Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 98240 GACAAAGTA 98248 ||||| || Sbjct 287 CACAAAATA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410722397125454