Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14564 174 2e-38 seq14857 132 5e-26 seq14858 87.8 2e-12 >seq14564 Length=527 Score = 174 bits (192), Expect = 2e-38 Identities = 200/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 65767 CCACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAG 65826 ||| ||||| ||||||||||| ||||||| || || |||| ||||| | | || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 65827 CTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGA 65886 || ||||| || |||||| ||| || ||||||| ||||| |||||| || |||| Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 65887 CTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATG 65946 || || |||||||||||||| || ||||| || ||||| | || |||||||||| ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 65947 CGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTC 66006 ||| ||||| || | |||| ||| ||| ||| || | || ||||| |||||||| || Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 66007 GACGAAGTAGGCGGCCACCACCTTGCCGG 66035 || || || | | | ||||| ||||||| Sbjct 287 CACAAAATAAGAGCCGACCACTTTGCCGG 259 >seq14857 Length=2032611 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || |||||||| ||||| || ||||| | |||||||| | Sbjct 1173327 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 1173386 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| || |||| || || ||||| || || | ||| Sbjct 1173387 TCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 1173446 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| | ||||| ||||||| Sbjct 1173447 CAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 1173506 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| |||| || || Sbjct 1173507 AACATCCAGAAGGAATCCACTCTCCA 1173532 >seq14858 Length=1827956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || || |||||||| | || || || | Sbjct 1580054 AAAATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCG 1580113 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| ||| || | ||||| || || || ||| | || Sbjct 1580114 TCAGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGAT 1580173 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | || ||||| ||| |||| |||| || || || |||||| Sbjct 1580174 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTAC 1580233 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||||||| | || || || | || ||||| Sbjct 1580234 AACATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCG 1580271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || |||||||| | || || || | | Sbjct 1580685 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580744 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | |||| ||| || | ||||| || || || ||| | || || Sbjct 1580745 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| ||| |||| |||| || || || |||||||| Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || || | || ||||| Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCG 1580900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || |||||||| | || || || | | Sbjct 1580913 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580972 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | |||| ||| || | ||||| || || || ||| | || || Sbjct 1580973 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581032 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| ||| |||| |||| || || || |||||||| Sbjct 1581033 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAA 1581092 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | || || || | || ||||| Sbjct 1581093 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCG 1581128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515123491593360