Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq9290 206 7e-49 >seq9290 Length=604 Score = 206 bits (228), Expect = 7e-49 Identities = 387/564 (69%), Gaps = 15/564 (3%) Strand=Plus/Plus Query 11507 CGGTTGCTAACCTCGACAGTTCGATCACCGCGCTTTGCCTGGCTTACGACGATATGCTGC 11566 |||| |||||||| || | | |||||| ||||||||||| | || |||||| || Sbjct 36 CGGTAGCTAACCTTGATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCGC 95 Query 11567 AGGCGAAGGTGACGATACATGACACCCTTGGTAAGTATCTCGATGCGAGAAACTTCACCG 11626 |||| || ||| ||| || || || | | | | ||||| ||||| | || || | | Sbjct 96 AGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCAG 155 Query 11627 GAGGCAATCCGACAGCCGATCCGACCCAGGAGAAGCTGAAGGTTTTCTACATCGATGCAA 11686 ||| || || ||||| |||||| ||||| |||||| |||| |||||||||||| | Sbjct 156 AAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGATCGTA 215 Query 11687 AGAGCAGTGAAACCAATGAAGTTGTTGAGTTCACACTATCCAGCCCTATGGATCTGCAGG 11746 || | |||| | ||||| |||||||| ||| || || || || || | || Sbjct 216 AGGCAACGGAAAGCGATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCGGG 275 Query 11747 GGCTGATGATACCTACCCGCCAGCTTCATTCTCTGTGCACATGGTGCATCCGGAACAAGT 11806 |||| || || ||||| || ||||| || || || ||||| ||| | || Sbjct 276 GGCTACGTATCCCGACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTGGT 335 Query 11807 ACCGAACCGGCGACGGCTGCGACTATGCCGGTACGCGCTATTTCGACAAAAACAACAACC 11866 |||||||||| | |||||||| ||||||||||| || ||||| ||| | || ||| | Sbjct 336 ACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAATC 395 Query 11867 AGGTAAGCGATCC--GTCACTGGATGAATGCAACGGAACGCTGACGGCCTG-CAAACTTC 11923 ||| |||||| || | ||| ||| ||| ||||| | || |||| | Sbjct 396 CGGTTGACGATCCCAGTAA--GGACCGTTGCGGCGGCCTGCTGAGTGATTGCCAAAAAAC 453 Query 11924 GGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGATCAGG- 11982 | || ||||| ||| | | | |||| ||||||||||| || |||| ||||| || Sbjct 454 GTTTTGGTGATAACGAGCCATTACCGTTCGGTGGGTTCCCCGGCGCGTCATTGATCCGGC 513 Query 11983 AGT-------TGAT--ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGC 12033 ||| ||| ||| |||||||||| | || |||||||||||||||| || Sbjct 514 AGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGCGGCCATTATGGCGCATGCTGAGGC 573 Query 12034 TGAATATCCTCGTGAGTGCTGCGG 12057 ||| ||||| |||||||| ||||| Sbjct 574 TGAGTATCCGCGTGAGTGTTGCGG 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130258608636066