Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq9290 172 1e-38 >seq9290 Length=604 Score = 172 bits (190), Expect = 1e-38 Identities = 363/535 (68%), Gaps = 26/535 (5%) Strand=Plus/Plus Query 12359 GTATGACGATCTGCTGCAGGCGAAAGTCACTATTCACGACACAAAAGAGAAATATCTCGA 12418 || ||| ||| || |||||| ||||| || ||||| || | | ||||| || Sbjct 79 GTTTGAGGATATGGCGCAGGCCAAAGTGCTGATCCACGATACGTTGGTTCACTATCTGGA 138 Query 12419 TGCCAGAAATTTCGCGGACGGCAACCCCACAGCAGACCCGACTCAGGAAAAGCTGCAGGT 12478 ||| | ||||| | || || ||||| ||||| || ||| ||||||||||||||||| Sbjct 139 TGCTCGTAATTTTCCAGAAGGAAACCCTACAGCTGATCCGGTACAGGAAAAGCTGCAGGT 198 Query 12479 CTGGTATATCGACGGGAA---AACTGGCGAGCTTGCCGGTGAAACCGTTGAATTTGTTCT 12535 || || ||||| | || ||| || || || |||| | ||||| |||| || Sbjct 199 CTTCTACATCGATCGTAAGGCAAC-GGAAAG-----CGATGAATCGGTTGAGTTTGAACT 252 Query 12536 GTCCAGCCCGATGGACCTGCAGGGGCAAATGATCCCGACGCGACAGCTTCATTCCCTGTG 12595 ||| || ||| ||||| | ||||| | |||||||| || || ||||| ||| || Sbjct 253 GTCGAGTCCGGCAGACCTTCGGGGGCTACGTATCCCGACCCGGCAAATTCATAGCCTATG 312 Query 12596 TACCTGGTGCATCCGGAATAAATATCGTACCGGCGACGGCTGCGACTATGCCGGCATCCG 12655 ||||||||| ||| || || ||||| | |||||||| |||||||| | ||| Sbjct 313 TACCTGGTGTTCCCGTGGCTGGTACCGAACCGGTAAAGGCTGCGATTATGCCGGTACCCG 372 Query 12656 CTATTTCGATAAAAACAACAACCCGGTAAGCGATCCGTCGCTGGATGAATGCAATGGCAC 12715 ||||| || | || ||| ||||| |||||| ||| ||| ||| Sbjct 373 ATATTTTGACGACAAGGGCAATCCGGTTGACGATCCCAGTAAGGACCGTTGCGGCGGCCT 432 Query 12716 GCTGACGGCCTG-CAAACTCCGATTCGGCGAAAATAACGA---ACTCTCGTTTGGTGGCT 12771 ||||| | || |||| || || || | ||||||| | | |||| ||||| | Sbjct 433 GCTGAGTGATTGCCAAAAAACGTTTTGGTG---ATAACGAGCCATTACCGTTCGGTGGGT 489 Query 12772 TCCCGGGCACGTCTTTGATCAGG-AGT-------TGAT--ATGCGTCAGAAAACCATAGA 12821 |||| ||| |||| |||||| || ||| ||| ||| |||||||||||| Sbjct 490 TCCCCGGCGCGTCATTGATCCGGCAGTAGGGGGGGGATGCATGAAAGAGAAAACCATAGC 549 Query 12822 TGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAGTGTTGCGGCGTGGTG 12876 || |||||||||||||||| ||||| ||||| | ||||||||||||| | ||| Sbjct 550 GGCCATTATGGCGCATGCTGAGGCTGAGTATCCGCGTGAGTGTTGCGGCATTGTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126998384083708