Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq14564 100 3e-16 seq14857 82.4 9e-11 >seq14564 Length=527 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 96453 CAAAGTGACGGGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGA 96512 ||||||| || |||||||||| ||||||||||| |||| ||||| || ||| || Sbjct 263 CAAAGTGGTCGGCTCTTATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGA 322 Query 96513 CAAGGTGCCCATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGG 96572 ||| |||| | || ||||||||| | ||||||| ||||| || || || || || Sbjct 323 TAAGCTGCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGG 382 Query 96573 CGACGGTATCAACGACAGTCTAAAACAG 96600 || || |||||||||||||| ||| || Sbjct 383 TGATGGCATCAACGACAGTCTGAAAGAG 410 >seq14857 Length=2032611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| ||||| || || ||||| || | || || | |||| || Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 1173480 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | | |||||| ||| | Sbjct 1173479 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCC-T 1173421 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | |||| | | | ||||| | || || || | ||||| || | Sbjct 1173420 GAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCT 1173361 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || |||||||| || || || |||||||| Sbjct 1173360 TGCCGGTGAGCGTCTTCACGAAAATCTGCATTTT 1173327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571711377733080