Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq10212 132 1e-26 seq2366 107 5e-19 >seq10212 Length=656 Score = 132 bits (146), Expect = 1e-26 Identities = 353/529 (67%), Gaps = 18/529 (3%) Strand=Plus/Minus Query 21828 TGCATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCGCCTTAAGCCAGTAGAA 21887 ||||| || || ||| ||| | || | |||||||||||| || | | |||||| | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 21888 AGCGCAAACTCTACGACTGACTTTAGCGGTTCCTGGCATTCATCAATCAACCTTTTTGCC 21947 || ||||| || ||| || || || ||||| |||| ||||| | || | || |||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 21948 TCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTCGGCTGAGGAACTTTGATGATCGGA 22007 | || || ||||| || | ||||| ||| | ||| || || ||||| | || Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 22008 GCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATGAA 22067 | ||| || | | |||||| || | ||| |||||||| | || ||||| || || | | Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 22068 AGGTGAGTTGCTTTTGTAGCTACTGCTGCCGGCTTAGGCTTGAATACCGGAGGCTGCT-- 22125 ||||| | || ||||| | || | | || || || | ||| || | Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT---TCGCGGCGGTATCACA 358 Query 22126 -TCCCATTCTT--CC--TGCAAGCTTCATCCATTAACTTCCAGTTTTCCTCATGCCG-CC 22179 | || ||||| || |||| | || |||| | |||| ||||| |||| || Sbjct 357 ATGCCTTTCTTAGCCATTGCAT-CAACACGCATT---TGCCAGCGCTCCTC-TGCCTTCC 303 Query 22180 GATTAGTTAT-CTTCTGGATGGCGGAGTAAATCTTCGTCTCGGTAATATCCTTCAACTGC 22238 ||| || || | || || ||| ||| || || | |||||| ||||||||||| Sbjct 302 TATTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATAAA 244 Query 22239 ATTCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTTGTCATCATCCAGCGACTTC 22298 | || |||||||| |||||||||||| ||||| | |||||| |||| || || ||| Sbjct 243 ACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATTTC 184 Query 22299 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTCAAAAGTCA 22347 || ||||| || || |||||||| | | || ||| | ||||| |||| Sbjct 183 TTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCA 135 >seq2366 Length=702 Score = 107 bits (118), Expect = 5e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 40742 AAGTGGCACTCACCGACAAGCAAGAAATGTTCTGTCATGAGTACCTCATCGATTTAAACG 40801 || |||||||||||| ||| ||||| |||||||||| ||||||||||||||||| |||| Sbjct 617 AAATGGCACTCACCGGCAAACAAGACATGTTCTGTCGCGAGTACCTCATCGATTTGAACG 558 Query 40802 CCACGCAAGCGGCGATTTGGGCGG 40825 || |||||||||| ||| |||||| Sbjct 557 CCGCGCAAGCGGCCATTCGGGCGG 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133371659165452