Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq14858 102 6e-17 seq14857 100 2e-16 seq14564 93.3 3e-14 >seq14858 Length=1827956 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||||||||||||| ||| || |||| Sbjct 1580268 AAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1580209 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 1580208 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1580149 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| ||| || || | || || ||| Sbjct 1580148 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580089 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||||||||||||||| ||||| ||| Sbjct 1580088 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 1580053 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||||||||||||| ||| || |||| Sbjct 1580897 AAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1580838 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 1580837 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1580778 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| ||| || || | || || ||| Sbjct 1580777 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580718 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 1580717 TTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||||||||||||| ||| || |||| Sbjct 1581125 AAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCT 1581066 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 1581065 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1581006 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| ||| || || | || || ||| Sbjct 1581005 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580946 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 1580945 TTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||||||||||||| ||| || |||| Sbjct 1581649 AAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1581590 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 1581589 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1581530 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| ||| || || | || || ||| Sbjct 1581529 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTC 1581470 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 1581469 TTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 >seq14857 Length=2032611 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||||||| || | |||| || Sbjct 1173538 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 1173479 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||| ||| | Sbjct 1173478 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 1173419 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || |||| || ||||||||| Sbjct 1173418 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 1173359 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 || || || |||||||| || || ||||| ||||| Sbjct 1173358 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTGCC 1173324 >seq14564 Length=527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 7094 ACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGAAATCG 7153 || |||||||| |||||| | ||| | || |||||| || |||||| || || Sbjct 517 ACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACACTTTAAAGTCC 458 Query 7154 TCTCGGCCCGCGCACGATCTTTGCAACGCTTCAAA-CGACCCCGGCACCTGTTTCAAGGC 7212 || |||||| ||| || | |||||||| | || | ||| | | || ||||| Sbjct 457 TCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCG-ATCTCTTTCAGACT 399 Query 7213 GTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGAGATT 7272 |||||||| || || || || || || || | ||| |||||||||||||| | || || Sbjct 398 GTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATGCGTCAGGTT 339 Query 7273 GGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCACAAAGTA 7332 || | |||| ||| || ||| || | || ||||| || ||||| |||||||| || Sbjct 338 TTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTCCACAAAATA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395003644597081