Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq14564 105 5e-18 >seq14564 Length=527 Score = 105 bits (116), Expect = 5e-18 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 91695 CCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAAC 91754 ||| |||| || || ||||| ||| || | || || |||||||||| || || || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 91755 TTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGT 91814 |||||| || || || || | ||| || || ||||| | || ||||| || Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 91815 TTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATG 91874 ||| || ||||| | ||||| || || || || || ||||| ||||||| || ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 91875 GGACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTC 91934 | || ||| || ||||| ||| |||| | || || || ||||| ||||||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 91935 AACAAAGTACGCGGCGAC 91952 ||||| || | | |||| Sbjct 287 CACAAAATAAGAGCCGAC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379275293807445