Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 181 9e-41 seq14858 114 1e-20 seq14857 113 4e-20 seq57 89.7 5e-13 >seq21 Length=852027 Score = 181 bits (200), Expect = 9e-41 Identities = 325/475 (68%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 22727 GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTG 22786 ||||| || ||||| || ||||| | ||| || | || ||| ||||||||| || || Sbjct 418282 GCGGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTG 418223 Query 22787 TTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGC 22845 ||||| || || || ||| ||| |||| ||| || | | || ||| ||||| || Sbjct 418222 TTCAAGACGCGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGC 418164 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 | |||||| || || | ||||| ||||||| | || || | || || ||||| Sbjct 418163 GAGACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGG 418104 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 || ||| || | || |||||| | |||||||||||| |||| | ||| || Sbjct 418103 CACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT 418044 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT----GTACAACAAACTTGTTGACGG 23021 || |||||| ||| || | | | | || |||||| | | Sbjct 418043 TCGCTTCAAGTGTTCGAAGTCG-AAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCG 417985 Query 23022 CGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGG 23081 || ||||| | ||||| || ||||||||||||||| ||||||||| || | ||| | Sbjct 417984 AGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGACTTCTG 417925 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | || | ||||| || || || || ||||| || |||||||||| || |||||||| | Sbjct 417924 TGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAG 417865 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||||||||||||| |||| || || ||||| Sbjct 417864 CGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGC 417810 >seq14858 Length=1827956 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 1580914 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580973 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | |||||||||||| | || || || || Sbjct 1580974 GACACCATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581032 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||||||| ||| || || || || Sbjct 1581033 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAA 1581092 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 1581093 CATTCAGAAGGAGTCGACTCTCCACTTGGT 1581122 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 1580054 AAAATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCG 1580113 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || ||| | |||||||||||| | || || || Sbjct 1580114 TCAGACACCATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGA 1580172 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || || |||||||| |||||||| ||| ||| || || || Sbjct 1580173 TCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTA 1580232 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || || |||||||| || |||| Sbjct 1580233 CAACATTCAGAAGGAGTCGACTCTCCACTTGGT 1580265 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 1580686 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580745 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | |||||||||||| | || || || || Sbjct 1580746 GACACCATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || || || || Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGT 1580894 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 1581438 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 1581497 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | |||||||||||| | || || || || Sbjct 1581498 GACACCATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581556 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || || || || Sbjct 1581557 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1581616 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 1581617 CATTCAGAAGGAGTCGACTCTCCACTTGGT 1581646 >seq14857 Length=2032611 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| |||||||| | ||||| || || Sbjct 1173327 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 1173386 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||||| ||||| | || ||| ||||| || | ||||| ||| Sbjct 1173387 TCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 1173446 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| | || | ||| || Sbjct 1173447 CAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 1173506 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||| || |||| Sbjct 1173507 AACATCCAGAAGGAATCCACTCTCCACTTGGT 1173538 >seq57 Length=138120 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCG 58050 ||| ||||| || |||| || ||||| |||| | || || ||| ||||||| || | Sbjct 25751 CGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCG-CTATTTTCTGGCTGAAGAAGCGAG 25693 Query 58051 GCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATA 58110 || ||||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 25692 GCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCACG 25633 Query 58111 CTGATTTTGCGTGCCTAATGTACTCTCA 58138 | || |||||||| || | ||||| || Sbjct 25632 CAGACTTTGCGTGTCTCCTCTACTCGCA 25605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445683593319120