Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq2705 165 3e-36 >seq2705 Length=325 Score = 165 bits (182), Expect = 3e-36 Identities = 169/213 (79%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 ||| || ||||| ||| | |||||| || ||||| | ||| || ||| |||||||||| Sbjct 315 CATCCCTAGCGCCTGC-ATGTAGGTTTCCAGGATCGTCTCCTGTTCCTGACGCTCGTCGG 257 Query 44128 TGTCCTGCTTGCGCA-GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCC 44186 |||||||||||||| ||| ||| | | ||||| |||| | ||||||||| | ||| Sbjct 256 CGTCCTGCTTGCGCATGCG-GATAATGGTGCGCAGCGCCTTGACGTCGAAGCCGTTGCCC 198 Query 44187 TTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAG 44246 || || || || || || ||||||||||||||| |||||||||||| |||||||||| | Sbjct 197 TTGGCTTCACCATAGACGTCCTTGATGTCGTCGCTGATGGTCTTCTTCTCTTCCTCCA-G 139 Query 44247 CGT-TCGATGCGGTGGATGAAGGCCTTGAGCTG 44278 | | |||||||| | ||||| |||||||||||| Sbjct 138 CTTCTCGATGCGCTCGATGATGGCCTTGAGCTG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183577197610596