Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq1583 96.9 8e-16 seq10212 93.3 1e-14 >seq1583 Length=584 Score = 96.9 bits (106), Expect = 8e-16 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 32488 GATCCGGAGTCGCCGGAGTCTTTTATGTTACG--CCCAAAACGCCGCCGCTGGGTTAATG 32545 ||||||||| ||||| || | || || | | | |||||| ||| || ||| | || Sbjct 347 GATCCGGAGCCGCCGAAGGCATT-AT-TCAAGATCCCAAAGCGCGAGCGATGGACGAGTG 404 Query 32546 AAAAGTACACGCGCTGGGTTAAGACACAGCCGTGTGCATGTTGTGGAAAGCCTGCTGATG 32605 |||||| || || ||||||||| | |||||||| || || ||||| || || | || | Sbjct 405 AAAAGTTTACTCGTTGGGTTAAGTCTCAGCCGTGCGCTTGCTGTGGCAACCCATCCGACG 464 Query 32606 ATCCCCACCACCTGATAGGCCACGGTCAGGGTGGAATGGGTACAAAAGCGCATGACCTCT 32665 | || |||||| | || |||||||| || || || |||| || || || ||||| | | Sbjct 465 ACCCACACCACATCATCGGCCACGGCCAAGGCGGCATGGCCACCAAGGCACATGATTT-T 523 Query 32666 TTGTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCAT 32706 || | || | ||| | || ||||||||||| ||||| Sbjct 524 TTACCATCCCACTATGCCGGAAACATCACGACGATTTGCAT 564 >seq10212 Length=656 Score = 93.3 bits (102), Expect = 1e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 21125 GCTGCATGTCTATTTGTTGCCATTCAAGGTTGATGATGTTCGAGCGTCTTAAGCCTGTTG 21184 ||||||| || ||||| ||| |||| | ||| ||||| ||||| | | ||| || | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 21185 CCAGTGCAAATTCAACAACAGACTTTAATGGCTCCGGACATTCATCAATCAGCCTTTGTG 21244 |||||||||||||| ||| || | || || || || ||||| | | | ||||| Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 21245 CTTCATGGGGCTCCAGCCAGCGGATCCGTTTATTCTTTGGTTGAGGCACTTTAATAATTG 21304 | | | ||| || ||||| || | || || || || || ||||| || || | || Sbjct 536 CCTGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTG 477 Query 21305 GTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGGCTCTTAGTAGGGCCTTTATAAATG 21364 ||| ||| || | | ||||| || | || || || | | || ||||| || || | Sbjct 476 GTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAG 417 Query 21365 AAAGATGCGTAGCCTTCGTTG 21385 ||| ||| ||||||| |||| Sbjct 416 CAAGGTGCTTAGCCTTTGTTG 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118494285104152