Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq14564 123 2e-23 >seq14564 Length=527 Score = 123 bits (136), Expect = 2e-23 Identities = 179/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 21042 CCATGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCAC 21101 ||| ||| | || || || ||| |||||| | || || |||||||||| || | ||| Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 21102 CTTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGACACT 21161 |||||||| |||||||| ||| ||||| |||||||| | ||| || || || Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 21162 TTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATG 21221 ||| || ||||||||||| || || || || || || | || ||||||| |||||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 21222 CGACAAGTTCGGTGTGGGCACTTTATCGACGG-GAAACTGGCGCGGATACACACCCCATT 21280 || || ||| | | |||| |||||||||| |||| | || | || || ||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCG-TATACGCCCCATT 289 Query 21281 CGACAAAGTA 21290 | ||||| || Sbjct 288 CCACAAAATA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495971849911200