Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq14555 93.3 1e-14 seq383 91.5 4e-14 >seq14555 Length=438 Score = 93.3 bits (102), Expect = 1e-14 Identities = 187/274 (68%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 37499 ATGTTCATTGCACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTC 37558 ||||| |||||||| ||||| ||||| |||| || || ||| | | || | | | Sbjct 8 ATGTTTATTGCACAGGTTGGACATGAGTCTGGCGGATTCACCCGGACAGCGGAAAACCTG 67 Query 37559 AACTACTCGGTAGATGGGCTGATGAAAACCTTTGGTAAACGCCTGACGCCGTATCAGTGT 37618 || ||| || | || ||| || || ||||| || ||| | ||| ||||||| Sbjct 68 AATTACACGCCGCAAGGCCTGCTGGCTACATTTGGAAAGCGCATTACGGTTTATCAGTCG 127 Query 37619 GAAATGCTGGGGCGTGTCGATGGTAAGCAGGTGGCCCACCAGCCGCAAATAGCCAATCTA 37678 || |||||||| || | || ||| ||| | ||| || |||||||| Sbjct 128 GATATGCTGGGCCGCACGGCTGC---GCACCCAGCCAATCAGGAAGCTATCGCCAATCTG 184 Query 37679 GTTTACGGTGGCCGCATGGGTAACAAAG-ACGCCGGAGATGGCTGGAAGTATCGCGGGCG 37737 || |||| | ||| |||| |||||| |||| || || || ||||| |||||||| || Sbjct 185 GTATACGCCGATCGCCTGGGCAACAAATCACGC-GGTGACGGGTGGAAATATCGCGGCCG 243 Query 37738 TGGGCTTATCCAGATTACCGGGCTGGAGAATTAC 37771 ||| || || ||||||||||| | ||| |||||| Sbjct 244 TGGACTGATTCAGATTACCGGTCAGGATAATTAC 277 >seq383 Length=569 Score = 91.5 bits (100), Expect = 4e-14 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 27869 GTCAGCGAATCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCT 27928 || |||||||||||| | ||||| |||| | ||||||||||||||||||||||||||| Sbjct 214 GTAAGCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCT 155 Query 27929 GTTCGCTGCT 27938 |||||||||| Sbjct 154 GTTCGCTGCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128332548596302