Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq10212 158 3e-34 >seq10212 Length=656 Score = 158 bits (174), Expect = 3e-34 Identities = 360/531 (68%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 3577 GCTGCATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCGCCTTAAGCCAGTAG 3636 ||||||| || || ||| ||| | || | |||||||||||| || | | |||||| | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 3637 AAAGCGCAAACTCTACGACTGACTTTAGCGGTTCCGGGCATTCATCAATCAACCTTTTTG 3696 || ||||| || ||| || || || ||||| ||||| ||||| | || | || || Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 3697 CCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTCGGCTGAGGAACTTTGATGATCG 3756 ||| || || ||||| || | ||||| ||| | ||| || || ||||| | | Sbjct 536 CCTGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTG 477 Query 3757 GAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATG 3816 | | ||| || | | |||||| || | ||| |||||||| | || ||||| || || | Sbjct 476 GTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAG 417 Query 3817 AAAGGTGAGTTGCTTTTGTGGCTAATGCTGCCGGCTTAGGCTTGAATACCGGAGGTTGCT 3876 |||||| | || ||||| | || | | || || || | ||| ||| | Sbjct 416 CAAGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT---TCGCGGCGGTATCA 360 Query 3877 ---TCCCATTCTT--CC--TGCAAGCTTCATCCATTAACTTCCAGTTTTCCTCATGCCG- 3928 | || ||||| || |||| | || |||| | |||| ||||| |||| Sbjct 359 CAATGCCTTTCTTAGCCATTGCAT-CAACACGCATT---TGCCAGCGCTCCTC-TGCCTT 305 Query 3929 CCGATTAGTCAT-CTTCTGGATGGCGGAGTAAATCTTCGTCTCGGTAATATCCTTCAACT 3987 || ||| ||||| | || || ||| ||| || || | |||||| ||||||||||| Sbjct 304 CCTATTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATA 246 Query 3988 GCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTTGTCATCATCCAGCGACT 4047 | ||| |||||||| |||||||||||| ||||| | |||||| |||| || || | Sbjct 245 AAACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATT 186 Query 4048 TCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCA 4098 |||| ||||| || || |||||||| | | || ||||| ||||| |||| Sbjct 185 TCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130028249295762