Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30]
14,861 sequences; 67,701,403 total letters
Query= NC_004681.1
Length=75931
Score E
Sequences producing significant alignments: (Bits) Value
seq5757 118 5e-22
>seq5757
Length=557
Score = 118 bits (130), Expect = 5e-22
Identities = 319/482 (66%), Gaps = 11/482 (2%)
Strand=Plus/Minus
Query 66844 CATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66903
||| || ||||| || | ||||| || | || || || ||| || || || ||||
Sbjct 536 CATTGATGCTGAACATGCGCTGGATCCGGTATATGCGAAAAAGCTGGGCGTTGATATCGA 477
Query 66904 CAACCTCGTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCC 66962
|||||| || || | |||||| || || || ||||| || |||| ||| |||| |
Sbjct 476 CAACCTGCTG-TGTTCTCAGCCAGATACGGGTGAGCAAGCATTGGAAATCTGTGACGCCT 418
Query 66963 TCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 67022
| | ||||||| | | | || |||||||||| || || || || |||
Sbjct 417 TAACCCGCTCTGGCGCGGTTGATGTGATCATCGTTGACTCCGTAGCAGCGTTGACGCCAA 358
Query 67023 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 67082
|| || |||||||||| ||||| ||| ||| | |||||| || || | |||
Sbjct 357 AAGCAGAAATCGAAGGCGAAATCGGTGACTCACACATGGGCCTGGCGGCACGTATGATGA 298
Query 67083 CGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 67142
||||| ||||| || || | || | | | | | ||||||||||| | |||
Sbjct 297 GCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACGCCAACACGCTGCTGATCTTCA 238
Query 67143 TCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACCACCA 67199
|||||||| | || |||||| || | | ||||| |||| || |||||||
Sbjct 237 TCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCTA--ACCCG---GAAACCACCA 183
Query 67200 CGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 67259
| || || || || ||| ||||||||||| || || |||| ||||||| || | |
Sbjct 182 CCGGTGGTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCG 123
Query 67260 CCGAGAAGGAA-GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAAC 67318
| | ||| ||| ||||| | | || || | | ||||| |||||||| || ||||||
Sbjct 122 CGGTGAAAGAAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAAC 63
Query 67319 AA 67320
||
Sbjct 62 AA 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242810414590532
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |