Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14564 134 1e-26 >seq14564 Length=527 Score = 134 bits (148), Expect = 1e-26 Identities = 179/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 101032 CCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGAC 101091 ||| |||| ||||||||||| ||| || | ||||| | |||||||| || | || Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 101092 TTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGT 101151 ||| || || ||| |||| |||||| ||||||| ||| | || || || || Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 101152 TTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATG 101211 ||| || |||||||| ||| || ||||| || || || || |||||||||| || ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 101212 CGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTC 101271 || || || || ||||| || || || | ||||| |||||||| |||||||| || Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 101272 TACAAAATA 101280 |||||||| Sbjct 287 CACAAAATA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414497713222234