Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq5078 89.7 8e-13 >seq5078 Length=902 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 9007 CGACAAAGACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTT 9066 |||||| | ||||||||| ||| || || | || || || || || ||||||| Sbjct 2 CGACAAGGGCTATTACACCAACAGCTTCCATCTGGACGTAGAGAAAAAGGTCAATCCGTA 61 Query 9067 CGAGAAGATTGATTTCGAAGCAGCATACCCAATTCAT--GCGAATGGTGGTTTCATCTGC 9124 ||| ||| | ||||| ||||| | ||||| ||| || ||||| || |||||||| Sbjct 62 CGACAAGCTGGATTTTGAAGCGCCTTACCCGC--CATTGGCCAATGGGGGGTTCATCTGT 119 Query 9125 TATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTAC 9184 || | |||| ||||||| ||| | ||||| | |||| || || |||||||||||| Sbjct 120 TACGGCGAATACCCGAACCTGCAACACAACCTGAAAGCACTGGAAGATGTATGGGATTAC 179 Query 9185 GCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGATTGACCAGTG 9234 || | || | || | ||| || ||||||||||| || |||| Sbjct 180 AGCTACAGCCGCGTGCCTTATTACGGTACCAACACGCCGATCGATGAGTG 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783195284654640