Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq5078 123 4e-23 >seq5078 Length=902 Score = 123 bits (136), Expect = 4e-23 Identities = 280/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 36997 AGATGTTTTACTCGTTTTTGGACTTCATCCTGCTTGCC-GCGATTAAATGCGCGAGAACC 37055 || ||||| || || || ||||| ||||||||||| ||| || || | | | | | Sbjct 415 AGGTGTTTCACCCGGCGTTTCACTTCTTCCTGCTTGCCTGCG-TTGAACGGTCTGGCATC 357 Query 37056 AGGCGCACCGAGATAACCGCATACGCGACGAATAACGTTCATTTTGGTATCG-TCATGAT 37114 || |||||| || ||||| || ||||| ||||| || |||| || | || |||| Sbjct 356 CGGGCTACCGAGGTAGCCGCACACCCGACGCGTAACGGACACCTTGG-ATGGCTCGTGAT 298 Query 37115 TACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAATTCACCGTGATAGCCAC 37174 |||| ||||| || || | | |||||| ||| | |||||| ||| | |||||| Sbjct 297 TACCGCATTTCGGGCAGGTGAAGCCTTTGCTGGTACAGGAGAATTCGCCGGTAAAGCCAC 238 Query 37175 ATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAGAT-AAGC- 37232 | || |||| |||| | || || || || |||||||| || | | | | ||| Sbjct 237 ACTCGTAGCACTCATCGATCGGCGTGTTGGTACCGTAATAAGGCACG--CGGCTGTAGCT 180 Query 37233 ATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCTCCGTA 37292 |||||||| || ||||||| |||||||| || | || || ||||| ||||| ||||| Sbjct 179 GTAATCCCATACATCTTCCAGTGCTTTCAGGTTGTGTTGCAGGTTCGGGTATTCGCCGTA 120 Query 37293 TGAAATAAATCCACC--TGAACTCAGAGGAATAAATTGCTTTTCAAAATCAATCTTGTCA 37350 | || || || || || | | | ||| || ||||||||| | |||||| Sbjct 119 ACAGATGAACCCCCCATTGGCCAATGGCGGGTAA--GGCGCTTCAAAATCCAGCTTGTCG 62 Query 37351 TAAGGATTGGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATA 37400 || |||||| || | ||||| || ||||||||||| |||||||| Sbjct 61 TACGGATTGACCTTTTTCTCTACGTCCAGATGGAAGCTGTTGGTGTAATA 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746082180158640