Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq9797 87.8 2e-12 >seq9797 Length=509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 99574 ACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTCCCGGGGAAG 99633 ||||| ||| ||||| ||| ||| |||||||| ||| | |||| | ||| || Sbjct 2 ACGCCCTGGCCGGCCCAATGCTCGAGGAAGCCGTGCCGCGCCGGCGGAATGCCG----AG 57 Query 99634 TTCTTC-TGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTT 99692 || | | || || ||||||||| |||||||||||| | | ||||| | Sbjct 58 ATCGGCCTCCATCTCCTTGTAGATGTTGACCAGGCTGGGCGGGGTGCGCACGCCCGGCCG 117 Query 99693 CACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGAT 99752 ||| |||| ||| ||||| ||||| || | || || ||||| |||||||| ||||| Sbjct 118 CACCGAGAAGCACAGCCCGTGCGCCTGGCCCTCGCCATGATAGGGATCCTGGCCGAGGAT 177 Query 99753 GACGACCTTGACGTCCTCGGGCGCCG 99778 |||||| |||||||||| ||| || Sbjct 178 GACGACGCGGACGTCCTCGAGCGGCG 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440817297462360