Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq10938 100 1e-16 >seq10938 Length=337 Score = 100 bits (110), Expect = 1e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 55152 CAAGCCGATGTACGTGGTGCCGAACCACATGCTCGCGCAGTTCGCACGCGAATTCCTCGA 55211 |||| ||||| ||| || || |||| || |||||| || |||||||| |||| Sbjct 2 CAAGGCGATGATCGTCGTTCCCGGCCACTGCCTGGCGCAGGCGGCGCGCGAATTTCTCGC 61 Query 55212 GCTCTACCCGGCCGCGAACATCATGGTCGCGGACGAGCAGAATTTCCACACGCACAACCG 55271 |||||| ||| |||| ||| |||||||||||||| |||||| || | |||| || Sbjct 62 GCTCTATCCGAACGCGCGGATCCTGGTCGCGGACGAGACCAATTTCAGCAAGGACAAGCG 121 Query 55272 CCGTCGCTTC--GTCGCGCAGGCCGCGCTCAACAATCCGGATGCGGTCATCATCACGCAC 55329 | ||||||| ||||||| || ||| | | | ||||||| |||||||||| || Sbjct 122 GCATCGCTTCCTGTCGCGC--GCGGCGACCGCGACTTGGGATGCGATCATCATCACCCAT 179 Query 55330 TCGGCGTTCGGCCGCATC 55347 || || ||| || |||| Sbjct 180 TCAGCTTTCCGCTTCATC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204260597937903