Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14858 150 4e-31 seq14857 132 1e-25 >seq14858 Length=1827956 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| ||||||| ||||| || | || || ||| Sbjct 1580253 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1580194 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| |||||||| || || ||||| || ||||| |||||||| || Sbjct 1580193 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580134 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || || ||||| || ||||| || Sbjct 1580133 ACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTC 1580074 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 1580073 TTCACAAAGATCTGCATTTTG 1580053 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| ||||||| |||||||| | || || ||| Sbjct 1581110 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCA 1581051 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| |||||||| || || ||||| || ||||| |||||||| || Sbjct 1581050 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580991 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || || ||||| || ||||| || Sbjct 1580990 ACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTC 1580931 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 1580930 TTCACAAAGATCTGCATT 1580913 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| ||||||| ||||| || | || || ||| Sbjct 1581634 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1581575 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| |||||||| || || ||||| || ||||| |||||||| || Sbjct 1581574 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1581515 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || |||||||| || ||||| || Sbjct 1581514 ACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTC 1581455 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 1581454 TTCACAAAGATCTGCATT 1581437 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| ||||||| ||||| || | || || ||| Sbjct 1580882 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1580823 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| |||||||| || || ||||| || ||||| |||||||| || Sbjct 1580822 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580763 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || || ||||| || ||||| || Sbjct 1580762 ACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTC 1580703 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 1580702 TTCACAAAGATCTGCATT 1580685 >seq14857 Length=2032611 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || ||||| ||||| || || || || || Sbjct 1173526 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCT 1173467 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || ||||| || |||||||||||||| || || Sbjct 1173466 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 1173407 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||| || || || | || || ||||| || || || || Sbjct 1173406 ACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTC 1173347 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 1173346 TTCACGAAAATCTGCATTTTG 1173326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151179166188588