Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq14858 104 2e-17 >seq14858 Length=1827956 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || || || || || |||||| ||||||||||| |||| | Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||| || | |||| | |||||||||||| || Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | | | ||||| || | | ||| Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580104 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 1580103 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || || || || || |||||| ||||||||||| |||| | Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||| || | |||| | |||||||||||| || Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | | | ||||| || | | ||| Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580733 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 1580732 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| |||| || ||| |||| |||| |||||| || | | Sbjct 1581105 CTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAA 1581046 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||||||| || | || |||||||||| || || ||| | | Sbjct 1581045 AATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATT 1580986 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| || | | ||| || | || ||||| || ||||| ||||| ||||| Sbjct 1580985 CTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCAC 1580926 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 1580925 AAAGATCTGCAT 1580914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| |||| || ||| ||||||||| |||||| || | | Sbjct 1581629 CTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAA 1581570 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||||||| || | || |||||||||| || || ||| | | Sbjct 1581569 AATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATT 1581510 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| || | | ||| || | || || || || ||||| ||||| ||||| Sbjct 1581509 CTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCAC 1581450 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 1581449 AAAGATCTGCAT 1581438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421174903640861