Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq10212 152 1e-32 >seq10212 Length=656 Score = 152 bits (168), Expect = 1e-32 Identities = 359/533 (67%), Gaps = 22/533 (4%) Strand=Plus/Minus Query 3577 GCTGCATGTCTATCTGCTGCCAATCCATATTGATAATGTTAGACCGCCTTAAGCCAGTAG 3636 ||||||| || || ||| ||| | | | |||||||||||| || | | |||||| | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 3637 AAAGCGCAAACTCTACGACTGACTTTAGCGGTTCCGGGCATTCATCAATCAACCTTTTTG 3696 || ||||| || ||| || || || ||||| ||||| ||||| | || | || || Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 3697 CCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTCGGCTGAGGAACTTTGATGATCG 3756 ||| || || ||||| || | ||||| ||| | ||| || || ||||| | | Sbjct 536 CCTGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTG 477 Query 3757 GAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATG 3816 | | ||| || | | |||||| || | ||| |||||||| | || ||||| || || | Sbjct 476 GTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAG 417 Query 3817 AAAGGTGAGTTGCTTTTGTGGCTACTGCTGCCGGCTTAGGCTTGAATACTGGAGGCTGCT 3876 |||||| | || ||||| | || | | || || || | | ||| | Sbjct 416 CAAGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT------TCGCGGCGGTA 363 Query 3877 TCCCATT--CTTCCT--GCAA--GCTTCATC---CATTAACTTCCAGTTTTCCTCATGCC 3927 || || | ||| || || | || ||| | |||| | |||| ||||| |||| Sbjct 362 TCACAATGCCTTTCTTAGCCATTGCATCAACACGCATT---TGCCAGCGCTCCTC-TGCC 307 Query 3928 G-CCGATTAGTCAT-CTTCTGGATGGCGGAGTAAATCTTCGTCTCGGTAATATCCTTCAA 3985 || ||| ||||| | || || ||| ||| || || | |||||| ||||||||||| Sbjct 306 TTCCTATTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAA 248 Query 3986 CTGCATCCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTTGTCATCATCCAGCGA 4045 | ||| |||||||| |||||||||||| ||||| | |||||| |||| || || Sbjct 247 TAAAACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGA 188 Query 4046 CTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCTCCTCAAAAGTCA 4098 ||||| ||||| || || |||||||| | | || ||||| ||||| |||| Sbjct 187 TTTCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132306247216546