Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq9290 89.7 2e-13 >seq9290 Length=604 Score = 89.7 bits (98), Expect = 2e-13 Identities = 235/359 (65%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 13076 GACGGGTCAATTACAGCACTATGCCTGTATTACGACGACATGGCGCAGGCGCGGGTCACG 13135 || |||| || || || || ||||| | | || || ||||||||||| || | Sbjct 50 GATGGGTTGATCACTGCGCTTTGCCTCCAGTTTGAGGATATGGCGCAGGCCAAAGTGCTG 109 Query 13136 ATACATGAGACCCAAAAGCAGTATCTCGATGCGCAAAACTTCCCGGAGGGAAACACGTCA 13195 || || || || || ||||| ||||| | || || || || |||||| | || Sbjct 110 ATCCACGATACGTTGGTTCACTATCTGGATGCTCGTAATTTTCCAGAAGGAAACCCTACA 169 Query 13196 GCAGACCCTACGCAGGAAAAGCGTCAGCTGTATTTTATCGATGCCAAAAATCTTGAAACT 13255 || || || |||||||||| ||| | | | |||||| || |||| Sbjct 170 GCTGATCCGGTACAGGAAAAGCTGCAGGTCTTCTACATCGATCGTAAGGCAACGGAAAGC 229 Query 13256 GATGAAGCGGTGGAGTTCACTCTCTCAAGCCCGATGGACCTGCAGGGGCTAATGATTCCT 13315 |||||| |||| ||||| || || || ||| ||||| | ||||||| || || Sbjct 230 GATGAATCGGTTGAGTTTGAACTGTCGAGTCCGGCAGACCTTCGGGGGCTACGTATCCCG 289 Query 13316 ACCCGGCAATACCACTCGATTTGCACATGGTGTACTCGCAACCAGTACCGCAGCGGCGAT 13375 ||||||||| || | || || |||||| | || | |||||| | ||| | Sbjct 290 ACCCGGCAAATTCATAGCCTATGTACCTGGTGTTCCCGTGGCTGGTACCGAACCGGTAAA 349 Query 13376 GGCTGCGATTATGCCGGGACAAAATATTTCGACAAGAATAACAAGCCGGTTGATGACCC 13434 ||||||||||||||||| || |||||| ||| | || ||| |||||||| || || Sbjct 350 GGCTGCGATTATGCCGGTACCCGATATTTTGACGACAAGGGCAATCCGGTTGACGATCC 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164972481445766