Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq5885 163 7e-36 >seq5885 Length=872 Score = 163 bits (180), Expect = 7e-36 Identities = 290/414 (70%), Gaps = 17/414 (4%) Strand=Plus/Plus Query 3956 TGGAGCTGCGCGAAG-CGGGCTTCCGGGCTGCTCTTGA--CCTTCTCCAGCGGGGCCACG 4012 |||||||| ||||| || || ||| |||||| ||| | ||||| ||| || || | | Sbjct 58 TGGAGCTG-GCGAAAACGCGCCTCCTGGCTGCGCTTAATGCCTTC--CAGTGGTGCGATG 114 Query 4013 GCGGCCATGATTGCTTCCGCGATGTGCGTCGCCTTCAGCGTCTTGCCTTTCTGGTCGTTG 4072 | | ||||| || || || || || || ||||||||||||||||| | |||||| Sbjct 115 GTGCTGATGATCGCCTCAGCAATCGACGCAGCTTTCAGCGTCTTGCCTTTGTTGTCGTTA 174 Query 4073 TCCTCCATCGCCAGCACGTACGGCTTGATGACGATGATCGGATGACTCTCGCGCATCACG 4132 || |||||||| | | ||| |||| || || | | || | ||||||| | | | Sbjct 175 TCTTCCATCGCGATGATGTAGGGCTCAATCACAACCACTGGCGCATTCTCGCGGTTGATG 234 Query 4133 CGGTCTTCGAGGTCGCGCATCAGCGTCGTCTTGCCGCCGCCCGATTCCGCGACGACGGCC 4192 || || | ||||| || |||||| | |||||| |||| || || | || || ||| Sbjct 235 CGTTCGACCAGGTCACGGCGCAGCGTGGACTTGCCAGCGCCAGACTCGCCAACTACAGCC 294 Query 4193 AGGAGCCCGCCATGCTTCGCAGTCTGGAACATTGCCTCGCGCACGTAGCGAATATCGGGG 4252 || | ||||| || ||||||||||||| ||||| || || || |||||||| ||| Sbjct 295 AGAAAACCGCCGTGACGAGCAGTCTGGAACAGCGCCTCACGGACATAACGAATATCCGGG 354 Query 4253 CTGACGAACATGTCTTCGTGCGA---CTGGA---TGTCATCCGCGAACGGGTCACGGAAC 4306 || |||| ||||| ||| ||| | ||| || ||||||||||||||||| Sbjct 355 GTGGTAAACACATCTTC---CGAACCCTGTAATGCGTCGTCGGCGAACGGGTCACGGAAT 411 Query 4307 AGGCCGAAGTGCTTACGGGTGGCTGGTGCGAGAACCTG-TTTGCGCAGTAACAT 4359 | ||||| ||||| || ||||| | |||||| |||||| |||||||| Sbjct 412 AAACCGAAATGCTTTTTCGTTGCTGGATGTAAAACCTGTTTTGCG-AGTAACAT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117451269202220