Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq28 158 2e-34 >seq28 Length=694207 Score = 158 bits (174), Expect = 2e-34 Identities = 198/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| || | Sbjct 208366 CGCGAAGCGTCACCGAA-AGGTGTTGCGTGATAACATCCAGGGTATCACCAAGCCGGCCA 208424 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| ||||||||||| || |||||| | ||||| | |||||||||||| Sbjct 208425 TCCGCCGTCTGGCGCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTATGAAGAGA 208484 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | |||| ||| |||||| | ||||| ||| | | ||| | || | || ||| || | Sbjct 208485 TCCGTGGTGTCTTGAAGGTGTTCCTTGAGAACATCATCAAGGACTCCGTCACCTACACGG 208544 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | ||||| |||||| | ||||| || ||||| | |||| || || | Sbjct 208545 AGCACGCCCGCAGAAAGACCGTCACCGCTATGGACATTGTCTACTCCCTGAAGCGCCAGG 208604 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||| || ||||| Sbjct 208605 GCAGAACCCTCTACGGTTTCGGTGGTTAA 208633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061612483673