Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq10212 127 6e-25 >seq10212 Length=656 Score = 127 bits (140), Expect = 6e-25 Identities = 419/643 (65%), Gaps = 14/643 (2%) Strand=Plus/Minus Query 26877 TGCATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCGCCTTAAGCCAGTAGAA 26936 ||||| || || ||| ||| | || | |||||||||||| || | | |||||| | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 26937 AGCGCAAACTCTACGACTGACTTTAGCGGTTCCGGGCATTCATCAATCAACCTTTTTGCC 26996 || ||||| || ||| || || || ||||| ||||| ||||| | || | || |||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 26997 TCGTGAGGCTCAAGCCAGCGAATACGCTTATTTTTCGGCTGAGGAACTTTAACGATCGGA 27056 | || || ||||| |||| ||||| ||| | ||| || || || | | || Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 27057 GCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGTTCGTAGGAGTGCCTTAATGAATGAA 27116 | ||| || | | |||||| || | ||| |||| || | || ||||| || || | | Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 27117 AGGTGAGTTGCTTTTGTGGCTATCGCTGCTGGCTTAGGTTTGAATACCGGAGGCTGCT-- 27174 ||||| | || ||||| | | | | | || || ||| | ||| || | Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT---TCGCGGCGGTATCACA 358 Query 27175 -TTCCTTTCTTCCTGCAA--GCTTCTTCCATCATCTTCCAGTTTTCCTCGTGACGACG-A 27230 | |||||||| || | || || | ||| | |||| ||||| || | | | Sbjct 357 ATGCCTTTCTTA--GCCATTGCATCAACACGCATTTGCCAGCGCTCCTC-TGCCTTCCTA 301 Query 27231 TTTGTCAT-CTTCTGGATGGCGGAGTAAATCTTCGTTTCGGTAATATCTTTCAACTGAAT 27289 || ||||| | || || ||| ||| || || | ||||| ||||| ||||| || Sbjct 300 TTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATAAAAC 242 Query 27290 CCCTGCAAAATGCTGGAGCCAGAATCCTATCCGGCTTTTGTCATCGTCCAGCGACTTCTT 27349 ||| |||||||| |||||||||||| ||||||| ||||| | || || || ||||| Sbjct 241 CCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATTTCTT 182 Query 27350 ATGCGCCTTCTCCTCTAACCACCTGACACAGGCTTCCTCAAAAGTCATGTCAGGCGTCTC 27409 ||||| || || |||||||| | | || || || ||||| |||| | || || Sbjct 181 GTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCACATTCGGGAAGTC 122 Query 27410 GCCTAATTTACTTACCCTCCATGCTTCGGCCTTCAGCCTGTCATGAAGCTCCGTGGCCTG 27469 || || || ||||| ||| || || | ||| || |||||| || || Sbjct 121 CCCCAAACGCTCTATTCTCCAAAGTTCAGCTTTTCTACGGTCGTGCAGCTCCTGCGCTTG 62 Query 27470 CCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTTTGCCG 27512 | | ||||| |||||||| || | ||||| || |||||| Sbjct 61 GCGTCTGTCCGAAGTCCCAAGCGATTCCTTAATTCGCTTGCCG 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149931936185084