Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq4204 138 1e-27 seq2293 105 8e-18 >seq4204 Length=800 Score = 138 bits (152), Expect = 1e-27 Identities = 288/420 (69%), Gaps = 17/420 (4%) Strand=Plus/Plus Query 155619 GCCCGTGCATACATCGAATATCGTCACGATCGCGATATTGCCCGTGAACAGAAAAGTAAG 155678 || || || || ||||| |||||||||||||| || | || || || | | || | Sbjct 327 GCACGCGCCTATATCGAGTATCGTCACGATCGTGACGTGGCGCGCGAGCTGC---GTGGG 383 Query 155679 CTGTTCAA---AGATATCTCCGGTATGGTGAATCTGTCCAACAAAGAGATCACCAACGAG 155735 | |||| ||| ||| ||| ||||| | | ||||| | | | ||||| Sbjct 384 CGACTCAACCAAGAGATCCGCGGCCTGGTGGAACAAAGCAACATGGCGTTGCTGAACGAA 443 Query 155736 AACGCGAACAAACAC-GCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGGTATTGT 155794 || || || ||| || |||||| || ||| || |||||| | ||||||| || || || Sbjct 444 AATGCCAATAAAGACAGCAAGGTGATCCCC-ACCCAGCGCGACCTGCTGGCCGGGATCGT 502 Query 155795 AGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAA---GCGCATGA 155851 || ||||||| |||| | |||||||| || || | ||| | || || || Sbjct 503 CGCCAAGCATTACGCCAAACAGCATATCCTGCC---ACGTGACGTGGTGCTGGCCCACGA 559 Query 155852 CTC-CGGCGACATCCACTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAAAC 155909 | |||||| |||||||| || ||||| |||||| || ||| || || ||| | Sbjct 560 AGCGCGGCGAGATCCACTACCACGATCTCGATTACTCGCCCTTCTTCCCTATGTTCAA-C 618 Query 155910 TGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGAC 155969 ||| ||| | ||||||||||| |||||| | || |||||||| |||||||| || || Sbjct 619 TGCATGCTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAATGCCGAG 678 Query 155970 ATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAG 156029 |||||||| ||||| || ||| ||||| || | | |||||||||| ||||||| Sbjct 679 ATCGAACCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATCGCACAG 738 >seq2293 Length=1342 Score = 105 bits (116), Expect = 8e-18 Identities = 212/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 43546 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 43605 ||||| || | || | ||||||||| | ||||||| ||| ||| ||||| ||| Sbjct 733 GTTGCGCGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTG 792 Query 43606 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43665 || ||||||||||| || |||||||| || | || ||||||||| | ||| | Sbjct 793 TCTTTCTTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCA 852 Query 43666 ATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGAT 43725 ||||||| || |||||| |||||| || ||| |||| || || ||||| ||| Sbjct 853 CTGCCGGATCATGAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGAT 912 Query 43726 ACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA-T 43784 | |||||||| || |||| ||| |||| || | ||| | ||| || || | Sbjct 913 TCGATTCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCTGATCTC-AATCCCGGAACT 971 Query 43785 GGAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACA 43844 |||||| ||| | ||||| ||| | ||| || || || || ||| |||||| || Sbjct 972 GGAAACCTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCA 1031 Query 43845 CATTCAGCGTAA 43856 ||| ||||| Sbjct 1032 TATTATCCGTAA 1043 Score = 84.2 bits (92), Expect = 3e-11 Identities = 258/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 42998 TGCGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACT 43057 |||||||||| || || || || | ||||| | || | ||| || | |||| Sbjct 129 TGCGTAACTCCACCCTGTCAGCGCTGATGCCTTCGGAAACCTCTTCGCAGATTTCCAACG 188 Query 43058 CAACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGT- 43116 | || ||||| ||||| || || || || | | ||| | ||| | |||||||| ||| Sbjct 189 CCACCAACGGCATTGAGCCACCACGTGGCCACATCAGTATCAAAGCGTCGAAAGACGGTA 248 Query 43117 TCATTCAACCAGGTAGTACC-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTG 43175 | || ||||||||| || ||| || || || || | ||| || || || Sbjct 249 TTTTTGCGCCAGGTAGTGCCAGAATATGAGCG-TCTGAAAAACGACTACGAACTGCTGTG 307 Query 43176 GACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTT 43235 | |||| | || || | ||||| ||| | || | | | |||||||| || Sbjct 308 GGAAATGCCGAACAACG------ACGGTTACCTGCAACTGGTCGGTCTGATGCAGAAATT 361 Query 43236 TGTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAA 43295 | | || || |||| ||||| |||||||||||||||||| | ||||| | || || Sbjct 362 TATCGACCAGTCGATTTCTGCCAACACCAACTATGATCCGACCCGTTTCCCTGGCGGCAA 421 Query 43296 AGTGAAATCTGAAACCATCATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAA 43354 ||| | |||| | ||| | |||||||| | || | | || || || | Sbjct 422 GGTG-CCTATGAAGCAGCTGTTGAAAGACCTGCTCACCACCTACAAGTTTGGTGTCAAGA 480 Query 43355 CTCTGTATTATCACAACACCCGCGACGGTGCAG 43387 | ||||||||||| ||||||||||||||||||| Sbjct 481 CGCTGTATTATCAGAACACCCGCGACGGTGCAG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577364727357600