Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq9838 102 2e-17 >seq9838 Length=883 Score = 102 bits (112), Expect = 2e-17 Identities = 237/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 35456 CTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCCACCGAAGCCAGTGCA 35515 |||||||||||| | || | | || || ||| |||| || ||| || | ||| Sbjct 300 CTCGACCCGCGTATTGGAAAGGATTTCCCTTTACCGACCTACGCAACCCCAGGCTCGGCA 359 Query 35516 GGCATGGACCTGCGTGCCGCACTGGAGG-CGCCGATGACGTTGCAGCCGGGCGATGCGGC 35574 || | || ||||||||| ||||| |||||| || | ||| ||||| || | | Sbjct 360 GGTCTCGATCTGCGTGCCTGCCTGGACAACGCCGAAGAACTGGCA-CCGGGTGAAACCAC 418 Query 35575 GCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCGGTGATCCT 35634 | || | || | ||| | || ||||| | |||||| || ||| ||||||||||| Sbjct 419 GTTGTTACCTACCGGTTTGGCTATCCACATCGCCGACACGAGTCTGGCTGCGGTGATCCT 478 Query 35635 GCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAA--CGGTACCGGCCTC 35692 |||||| || || | || ||| ||||| | ||||| ||||| ||| |||||| Sbjct 479 GCCGCGTTCAGGTTTAGGTCATAAGCACGGTGTGGTACTGGGCAATCTGGT--CGGCCTG 536 Query 35693 ATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGCGAGGCC 35752 ||||| | ||||||||||| || || | | |||||| || |||| | || Sbjct 537 ATCGACTCTGATTACCAGGGCCAACTGATGGTTTCCGTCTGGAACCGTGGCCAGAAATCC 596 Query 35753 TTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGT 35805 ||||| || || || || || || || || ||| ||||| | |||| || || Sbjct 597 TTCACGATTGAACCCGGTGAACGCATCGCACAGATGGTGTTTGTGCCTGTTGT 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149109681317610