Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14564 116 3e-21 >seq14564 Length=527 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 32180 TATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTGCCC 32239 |||||||| ||||||||||| ||||| || |||||| | | || || ||||| || Sbjct 279 TATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGATAAGCTGCCGGCGCAA 338 Query 32240 AATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAACGAT 32299 || || ||||| || ||||||| ||||| || || || ||||| || || | ||||| Sbjct 339 AACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGGCATCAACGAC 398 Query 32300 GCCCTCAAAACGATACCGGGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCCGCGCA 32359 || ||| ||| || || || ||||| |||| ||||| ||| | ||||| | Sbjct 399 AGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCAGGGCCGTGAG 458 Query 32360 GACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGGGCGT 32418 |||||||| || | || ||||| || | ||||| | || ||| || |||||||| Sbjct 459 GACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGCCAAAAGGGCGT 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425266962359320