Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq2366 102 2e-17 seq14555 89.7 1e-13 >seq2366 Length=702 Score = 102 bits (112), Expect = 2e-17 Identities = 169/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 383 CGCCTGGTGGAGATCGACCAGATGGACGTGATCGATATCCTCAACGACGATGGGAGCCTT 442 ||| |||| || ||||| |||||||| || | || || || || || || || |||| Sbjct 400 CGCTTGGTTGAAATCGATCAGATGGATGTATTGGACATTCTGAAAGATGACGGCGGCCTC 341 Query 443 AAACCAATCCGTGAGTGGCCGAAAATCTGGCGCACTACGCTTA-GTGGCTTTGATCTGTC 501 || | || |||| ||||| || | ||||| || ||||||| | || || || | Sbjct 340 AAGGCGATAAGTGAATGGCCTAAGGTGTGGCGTACAACGCTTAAGCGGATTCGACATAAA 281 Query 502 ATCGACCATCATGAACATGAACGAGGATTCGATAGAGACAATCCTCaaaaaaaTTAAATG 561 | | |||| || | |||| | || |||| |||||||||||| | ||||| Sbjct 280 TACTTCAATCACTAATTTTGACGAAACCACCATTGAGAGCATCCTCAAAAAAGTAAAATG 221 Query 562 GCCTGACAAGGTGAAGAACCTCGAACTGATTGGTAAGCACGTCGACGTCAACGCATTCAA 621 ||| || ||||| ||||| ||||||||| | || ||||| | ||||| |||||||| Sbjct 220 GCCGGATAAGGTCAAGAATCTCGAACTGCTCGGCAAGCATATATCCGTCATGGCATTCAA 161 Query 622 AGA 624 ||| Sbjct 160 AGA 158 >seq14555 Length=438 Score = 89.7 bits (98), Expect = 1e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 25797 AGCGATCGCCAATCTGGTGTACAGCAAACGCATGGGTAACAATGCTCCCGGCGATGGCTG 25856 ||| |||||||||||||| ||| | | ||| |||| ||||| | | ||| || || || Sbjct 169 AGCTATCGCCAATCTGGTATACGCCGATCGCCTGGGCAACAAATCACGCGGTGACGGGTG 228 Query 25857 GAATTACCGTGGGCGCGGGCTTATCCAGATTACCGGTTTGAATAACTATCGTGATTGCGG 25916 ||| || || || || || || || |||||||||||| | |||| || || | ||||| Sbjct 229 GAAATATCGCGGCCGTGGACTGATTCAGATTACCGGTCAGGATAATTACCGGGCATGCGG 288 Query 25917 AAACGGTCTGAAGGTTGACCTG 25938 | || ||||| |||||||| Sbjct 289 TACCGCGTTGAAGCTTGACCTG 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124989138726612