Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21 113 4e-20 seq14564 109 5e-19 seq14857 100 3e-16 seq14858 98.7 9e-16 >seq21 Length=852027 Score = 113 bits (124), Expect = 4e-20 Identities = 313/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Minus Query 145330 GGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 ||||||||||||||| ||||| |||||| |||| || || |||| || | ||||| Sbjct 418280 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 418221 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 | | ||||| ||| ||| |||| ||| || || | || || || ||||| Sbjct 418220 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 418161 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-- 145507 ||||| | ||||| |||| || || ||| || ||||||| || |||| ||| Sbjct 418160 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCT---TCGGG 418104 Query 145508 -ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAAT 145566 | ||| || || || ||||| | |||||||||| | | || || || Sbjct 418103 CACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT 418044 Query 145567 GTGCCGCAACTTTTCAAAGTCAAA---CCGAGCCTCG---TCAACGACCACA--CAGCTA 145618 || ||| | ||| ||||| || ||| |||| || |||| | |||| | Sbjct 418043 TCGCTTCAAGTGTTCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCGA 417984 Query 145619 TTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTAC 145677 ||||| | ||||| || || || ||| ||| || | ||| |||| | || Sbjct 417983 --GACGGAG------GCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGAC 417933 Query 145678 GATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCT 145737 || || | |||||| ||||| |||||||| ||||||| || | ||| || || |||| Sbjct 417932 GACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCG 417873 Query 145738 GTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCT 145790 ||||| ||||| ||||| ||||||||||| ||| ||||| | |||| || Sbjct 417872 ATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCT 417820 >seq14564 Length=527 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 23637 GTCGCCGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTC-CCGTAGACAAAGT 23695 |||| | | || ||||| || ||||||||||| | | |||||| |||| || || | Sbjct 270 GTCGGCTCTTATTTTGTGGAATGGGGCGTATACGGCCG-TAATTTCACCGTCGATAAGCT 328 Query 23696 GCCCGTGCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGG 23755 ||| | || || || | |||||||| ||||| || | || || || ||||| || || Sbjct 329 GCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGG 388 Query 23756 AATTAACGACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGC 23815 || |||||| ||| ||| | || || ||| ||||| |||||||||| ||| Sbjct 389 CATCAACGACAGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCA 448 Query 23816 GGGCCGCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAA 23869 |||||| | ||||| || || || ||||||||||||| || || | ||||| Sbjct 449 GGGCCGTGAGGACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAA 502 >seq14857 Length=2032611 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131025 CACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTC 131084 ||| || || | || || ||||| || |||||||| ||| | ||| | |||||| Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 1173480 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 ||||||||||||||| |||| | |||||||||||| || || ||||| || || || Sbjct 1173479 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 1173420 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 || || ||||| | || | || || | | ||||| ||| | || | || || Sbjct 1173419 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 1173360 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || || |||||||||||||| Sbjct 1173359 GCCGGTGAGCGTCTTCACGAAAATCTGCAT 1173330 >seq14858 Length=1827956 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || || || | ||||||||||| ||||||||||| || | Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || | || | ||||||||| || || || Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580104 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| ||||| || || || |||||||| Sbjct 1580103 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || || || | ||||||||||| ||||||||||| || | Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || | || | ||||||||| || || || Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580733 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| ||||| || || || |||||||| Sbjct 1580732 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||||||||||| ||||||||||| || | Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || | || | ||||||||| || || || Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1581485 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| ||||| || || || |||||||| Sbjct 1581484 TCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 131011 CCGCGCAA-ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCAT 131069 ||||| || ||||| || || || | ||||||||||| ||||||||||| || || Sbjct 1581138 CCGCGAAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAG 1581079 Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 || || ||| || | ||||||||| || | || | ||||||||| || || || || Sbjct 1581078 AGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAAT 1581019 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 ||||| ||||| ||| || ||| | | ||| | || || | | ||| | || Sbjct 1581018 ACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATC 1580959 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| || ||||| ||||| || || || |||||||| Sbjct 1580958 AAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471925117722240