Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14564 138 9e-28 seq14858 109 4e-19 seq14857 91.5 1e-13 >seq14564 Length=527 Score = 138 bits (152), Expect = 9e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 96762 ACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCT 96821 ||||||||||| ||| || | ||||| | || ||||| || | |||||||| || Sbjct 517 ACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACACTTTAAAGTCC 458 Query 96822 GAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCA 96881 |||||||||||| || || |||| ||| | || ||||| || ||| || Sbjct 457 TCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTCTTTCAGACTG 398 Query 96882 TCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTG 96941 ||||| | ||| || |||||||| || || ||||||||||||| |||||| | || ||| Sbjct 397 TCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATGCGTCAGGTTT 338 Query 96942 GGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATA 97000 || ||||| || || || | || ||||| || || |||||||||||||||||||| Sbjct 337 TGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTCCACAAAATA 279 >seq14858 Length=1827956 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| | | Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||||| || ||||| ||| |||| || ||||| || || || Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || ||||| |||||| | | | ||||| ||||| Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGC--CTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580106 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||| |||||||| || || || ||||| |||||||||||| Sbjct 1580105 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 1580053 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| | | Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||||| || ||||| ||| |||| || ||||| || || || Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || ||||| |||||| | | | ||||| ||||| Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGC--CTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580735 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||| |||||||| || || || ||||| ||||||||| Sbjct 1580734 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || ||||||||||| | | Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||||| || ||||| ||| |||| || ||||| || || || Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || ||||| |||||| | | | ||||| ||||| Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGC--CTTCACATTCTCGATGGTGTCTGACGGCTCAA 1581487 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||| || |||||||| || || || ||||| ||||||||| Sbjct 1581486 CATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| || || || |||||||| || ||||||||||| | || ||| | |||| ||| Sbjct 1581122 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCC 1581063 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 || || ||||| ||| |||| || ||||| || || || | || || ||||| || Sbjct 1581062 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 1581003 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 ||||| |||||| | | | ||||| ||||| || | |||||||| | Sbjct 1581002 ATCTTTGC--CTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCT 1580945 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||| || || || ||||| ||||||||| Sbjct 1580944 TTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 >seq14857 Length=2032611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| || || ||||| ||||| || ||||||||||||| | |||| || ||||||| Sbjct 1173538 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 1173479 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | || ||||| || | || || ||||| ||||| || | ||||| || || | Sbjct 1173478 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 1173419 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || | ||| || | | | ||||| ||||| |||| ||||| || || Sbjct 1173418 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 1173359 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| ||||| || || ||||||||||||||| Sbjct 1173358 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 1173326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405014631094390