Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14564 118 9e-22 >seq14564 Length=527 Score = 118 bits (130), Expect = 9e-22 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 57928 TTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCTTCTCGGCCTGCACAC 57987 || || | ||| || | |||||||| || | ||||| || || || ||||| || Sbjct 502 TTCTGCAACGCGGCAAACGGATCGTGGATTGACACTTTAAAGTCCTCACGGCCCTGGCAG 443 Query 57988 GAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTT-AGACTGTCGTTGATGCCATC 58046 ||||| |||||||| | || |||||| ||| ||||| |||||||||||||||||||| Sbjct 442 GAACGCTGCAACGCCTGGAAGCTACCTTCGATC-TCTTTCAGACTGTCGTTGATGCCATC 384 Query 58047 GCCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAAATTGGGTACGGGTACTTT 58106 || || || || || | || ||||||| |||||| |||| || | | || | || Sbjct 383 ACCGCCACAGATCGGGATAAACCCGTACAGCAAATGCGTCAGGTTTTGCGCCGGCAGCTT 324 Query 58107 ATCAACTGGATATTTACGACCGTACACACTCCACTCCACGAAATAAG 58153 ||| || | | ||||| ||||| || | ||| ||||| ||||||| Sbjct 323 ATCGACGGTGAAATTACGGCCGTATACGCCCCATTCCACAAAATAAG 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433249516309715