Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq14564 156 5e-33 >seq14564 Length=527 Score = 156 bits (172), Expect = 5e-33 Identities = 184/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 52187 CCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCAC 52246 |||||| | ||||| || || |||||||| ||| || | |||||||| || | ||| Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 52247 CTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGG 52306 ||||||||| | |||| ||| || || |||||||| | ||| || |||||| Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 52307 TTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATG 52366 |||||| |||||||||||||| || || || || || || || || |||||||||| ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 52367 CGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTC 52426 || |||||| || ||||| | ||| |||| || || || ||| ||||||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 52427 GACAAAGTA 52435 ||||| || Sbjct 287 CACAAAATA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537503333485560