Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9075 212 1e-49 seq14858 172 1e-37 seq14857 161 2e-34 seq28 100 5e-16 seq18 84.2 4e-11 seq5 84.2 4e-11 seq4 84.2 4e-11 >seq9075 Length=545 Score = 212 bits (234), Expect = 1e-49 Identities = 308/435 (71%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 |||| ||||| || || |||||||| |||||||| || | |||||||| |||||||| | Sbjct 18 CGCGGGTGATCTTGCGCGTCACGAAGGTCTCGCCGCGGATCGGGCTCTCATGGTTGAACA 77 Query 268422 GGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 |||||||||||| ||||||||||| || ||||| ||||||||||| ||||||| Sbjct 78 GGATGCCGTTGCTGGCGAACATGCCGTAGGCCTCGCGGTAGTTCACCGTGATCCAGTAGC 137 Query 268482 CAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAG 268541 | ||| ||| || || |||| || ||||| |||| || ||||| || ||| || | Sbjct 138 CGTACAGCTTGGCGACGCCGTAGGGCGAACGCGGATAAAACGGCGTGGTCTCCTTCTGCG 197 Query 268542 GGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTT 268601 | | || | || || | ||||| |||||||| || ||||||||| || | Sbjct 198 GCACCTCCTGCACGAGCCCGTACAGCTCCGAGGTCGAGGCCTGGTAGAACCGGGTCTCCT 257 Query 268602 TTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGT 268661 | || | ||| ||| ||||| ||||| |||| || || || ||| | || | | Sbjct 258 TCTCCATGCCGAGGATGCGGATCGCCTCCAGCAGGCGCAGCACGCCGATGGCGTCGGCAT 317 Query 268662 CCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTAT 268721 || || || ||||| ||||||| |||||||| |||||||||||| | ||||| | Sbjct 318 TGGCGGTGTATTCCGGGCTCTCGAAACTGACCTGGACGTGGCTCTGGGCGGCGAGGTTGT 377 Query 268722 AAACCTCATCCGGTTTGACCTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGT 268781 | | ||| ||| || |||||||| | | | || || || || ||||| | || Sbjct 378 AGATCTCGGTCGGCCGGATCTGCTGCATCAGCCGGATCAGATTGGTCGAATCGGTCATGT 437 Query 268782 CTCCGTAGTGCAACA 268796 | |||||||||| || Sbjct 438 CGCCGTAGTGCATCA 452 >seq14858 Length=1827956 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| ||||| |||||||| || || ||||| || || ||||| || || | Sbjct 1580285 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580226 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || |||||||| || || || || || | || || || || | Sbjct 1580225 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580166 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||||||||| || |||||||||||||| | || | Sbjct 1580165 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580106 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | |||||||| ||||| || || ||||| || || ||||||||| || Sbjct 1580105 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 1580053 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| ||||| |||||||| || || ||||| || || ||||| || || | Sbjct 1580914 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580855 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || |||||||| || || || || || | || || || || | Sbjct 1580854 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580795 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||||||||| || |||||||||||||| | || | Sbjct 1580794 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580735 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||||| ||||| || || ||||| || || ||||||||| Sbjct 1580734 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 163 bits (180), Expect = 5e-35 Identities = 173/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 68237 TCCGCGAAGG-CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGA 68295 |||||||| | ||||| |||||||| || || ||||| || || ||||| || || || | Sbjct 1581139 TCCGCGAAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACA 1581080 Query 68296 GTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAA 68355 | || | || ||||| |||||||| || || || || || | || || || || |||| Sbjct 1581079 GAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAA 1581020 Query 68356 TGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTT 68415 | ||||||||||| || ||||||||||| || |||||||||||||| | || || | Sbjct 1581019 TACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACAT 1580960 Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | | |||||||| ||||| || || ||||| || || ||||||||| Sbjct 1580959 CAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||||||| || || ||||| || || ||||| || || || Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || || || || || | || || || || ||| Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||||||||| || |||||||||||||| | || || Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1581485 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||| || ||||| || || ||||| || || ||||||||| Sbjct 1581484 TCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||| ||||||||||| || ||||||||||| || |||||||||| Sbjct 1580406 TGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTG 1580347 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | || || || | |||||||| ||||| || || ||||| || || |||||| Sbjct 1580346 TCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGC 1580287 Query 68460 ATT 68462 ||| Sbjct 1580286 ATT 1580284 >seq14857 Length=2032611 Score = 161 bits (178), Expect = 2e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| || ||||| || || || || || || Sbjct 1173538 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 1173479 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || | || ||||| || ||||| || ||||| || ||| Sbjct 1173478 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 1173419 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| ||||||||||| | | || || ||||| ||||| || || Sbjct 1173418 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 1173359 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || ||||| ||||| ||||| ||||||||| ||| Sbjct 1173358 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTGC 1173325 >seq28 Length=694207 Score = 100 bits (110), Expect = 5e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 |||||||||| ||| |||||||| | ||| | | | ||||| |||||||||||||| || Sbjct 380932 GTGATTTTTCTGGTGACGAACGTTTTGCCTCTTCGCGGGCTTTCGTGGTTGAAGAGAATT 380991 Query 268427 CCGTTGCACGC-GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 || ||| |||| |||||| || || ||| | ||||||||| ||||||||||| || Sbjct 380992 CCATTG-ACGCAGAACATCCCGTAGCTCTCTCTGTAGTTCACAACCGTCCAGTACGC 381047 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 277950 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 277891 Query 84517 CC 84518 || Sbjct 277890 CC 277889 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 278498 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 278553 >seq18 Length=1062189 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 535789 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 535844 >seq5 Length=2401786 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 214795 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 214740 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 214946 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 214891 >seq4 Length=2681483 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 123257 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 123202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921451197118920