Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq14564 136 3e-27 >seq14564 Length=527 Score = 136 bits (150), Expect = 3e-27 Identities = 272/400 (68%), Gaps = 11/400 (3%) Strand=Plus/Minus Query 84473 CCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAAT 84532 ||| |||| |||||||||||| || || | ||||| ||||||||||||| | | Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 84533 TTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCAC 84592 |||||| ||| |||| ||| ||| || || |||| | | ||| ||||| ||| | Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 84593 TTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTG 84652 ||| ||| ||||| || |||| |||||| || || || || || ||||||| ||| || Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 84653 TGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTC 84712 | | ||| || || | || || |||| ||||| || ||||| || |||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 84713 AACAAAATACGCAGCAACCGTTTTATCG---TCTCTTCTGCCCGGTTTGTTGTTTTCCCG 84769 |||||||| | | ||| ||| || ||| | | ||||| || |||||| Sbjct 287 CACAAAATAAGAGCCGACCACTTTGCCGGAATCTTGTTTATAAGGTTTATTCTTTTCCAA 228 Query 84770 CCATGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGCCACTTTGACCAA--- 84826 | | | || | || |||||||| | ||||||||| || ||||| | ||| Sbjct 227 CAGCGGTTCTTTTAAGGGTGCCAAATGGCTGCCGTCGGTATCGGCCAC----AACAATTT 172 Query 84827 CA-CGGAATCGCTCACGGAACAGCCGTCCTCATTGCACAA 84865 || | |||||| ||| ||||||||| |||| || || Sbjct 171 CAGTCGCATCGCTGGCGGTACAGCCGTCGGCATTACATAA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358059936995794