Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14857 89.7 4e-13 seq14858 82.4 6e-11 >seq14857 Length=2032611 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || | || || || || || || Sbjct 1173526 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCT 1173467 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| || ||||| || || || || |||||| || Sbjct 1173466 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 1173407 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | | |||||||||| || | ||| |||||||| || || Sbjct 1173406 ACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTC 1173347 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 1173346 TTCACGAAAATCTGCAT 1173330 >seq14858 Length=1827956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || || || | || || || || ||||||||||| || Sbjct 1581665 ACCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGA 1581606 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || || || | || || ||||| | || |||||||| || || || || Sbjct 1581605 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 1581546 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| |||||| || | | || | |||||| | | || || Sbjct 1581545 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAAC 1581486 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 1581485 ATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420058305913932