Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 140 6e-28 >seq21 Length=852027 Score = 140 bits (154), Expect = 6e-28 Identities = 313/464 (67%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 ||| |||| || || | ||||| |||||| ||||||| ||||||||| | |||| Sbjct 418280 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 418221 Query 244432 CATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAG 244491 || | |||| || | | || | ||| || || | | ||||||| |||| || || Sbjct 418220 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 418161 Query 244492 TCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCAC 244551 ||||| || || | |||| |||| ||||||| |||| | | ||||||||||| Sbjct 418160 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCAC 418101 Query 244552 GGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTC 244611 ||||| |||| | |||||||| ||| | ||| | || || | ||||| || Sbjct 418100 AGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGA-TTC 418042 Query 244612 GGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTC 244671 | | || || ||| | ||| | | || |||| | | | || ||| |||| Sbjct 418041 G--CTTCAAGTG---TTCGAAGTCGAAAG--TC--CGGCTCTCGCGGTC--CACGAACTT 417993 Query 244672 GTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGAC 244731 | || | |||| ||||| ||||||||| |||||||| || | | ||||||| ||| Sbjct 417992 GGGCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGAC 417933 Query 244732 AATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGC 244791 | || ||||| | ||| ||||| ||||| || |||| || || || ||| ||| Sbjct 417932 GACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCG 417873 Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 ||||| ||||| ||||| |||||| | ||| || ||||||| Sbjct 417872 ATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGA 417829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944163777189360