Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq5885 132 1e-26 >seq5885 Length=872 Score = 132 bits (146), Expect = 1e-26 Identities = 274/401 (68%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 27946 AAGCGGGCTTCCGGGCTGCTCTTGA--CCTTCTCCAGCGGGGCAACGGCGGCCATGATCG 28003 || || || ||| |||||| ||| | ||||| ||| || || | || | ||||||| Sbjct 70 AAACGCGCCTCCTGGCTGCGCTTAATGCCTTC--CAGTGGTGCGATGGTGCTGATGATCG 127 Query 28004 CTTCGGCGATGTGCGTCGCCTTCAGCGTCTTGCCTTTCTGGTCGTTGTCCTCCATCGCAA 28063 | || || || || || ||||||||||||||||| | |||||| || |||||||| | Sbjct 128 CCTCAGCAATCGACGCAGCTTTCAGCGTCTTGCCTTTGTTGTCGTTATCTTCCATCGCGA 187 Query 28064 GCACGTACGGCTTGATGACGATGATCGGATGGCTCTCGCGCATCACGCGGTCTTCGAGGT 28123 | ||| |||| || || | | || ||||||| | | ||| || | |||| Sbjct 188 TGATGTAGGGCTCAATCACAACCACTGGCGCATTCTCGCGGTTGATGCGTTCGACCAGGT 247 Query 28124 CGCGCATCAGTGTCGTCTTGCCGCCGCCCGATTCCGCAACGACGGCGAGGAGCCCACCGT 28183 | || ||| || | |||||| |||| || || |||| || || || | || |||| Sbjct 248 CACGGCGCAGCGTGGACTTGCCAGCGCCAGACTCGCCAACTACAGCCAGAAAACCGCCGT 307 Query 28184 GCTTTGCGGTCTGGAACATAGCCTCGCGCACATAGCGGATGTCGGGGCTCACGAACATGT 28243 | || |||||||||| ||||| || ||||| || || || ||| | |||| | Sbjct 308 GACGAGCAGTCTGGAACAGCGCCTCACGGACATAACGAATATCCGGGGTGGTAAACACAT 367 Query 28244 CTTCGTGCGA---CTGGA---TGTCATCCGCGAACGGGTCGCGGAACAGGCCGAAGTGCT 28297 |||| ||| ||| | ||| || ||||||||||| ||||| | ||||| |||| Sbjct 368 CTTC---CGAACCCTGTAATGCGTCGTCGGCGAACGGGTCACGGAATAAACCGAAATGCT 424 Query 28298 TACGGGTGGCTGGTGCGAGAACCTG-TTTGCGCAGTAACAT 28337 | || ||||| | |||||| |||||| |||||||| Sbjct 425 TTTTCGTTGCTGGATGTAAAACCTGTTTTGCG-AGTAACAT 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119684475029056