Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq9635 165 2e-36 >seq9635 Length=560 Score = 165 bits (182), Expect = 2e-36 Identities = 302/432 (70%), Gaps = 23/432 (5%) Strand=Plus/Minus Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 || |||||||| |||||| |||| | ||||||||| || || ||| | || Sbjct 542 CTGGCCGCCGACCGTCGGCACGCCGAACGAATTGCCGTAGCCGCCGACGCCCGCGACCAC 483 Query 42769 GCCGTGCACGACCCGCGCCGTGTC--GGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCC 42826 |||| ||| | | |||| ||| ||||| || | ||||||||||| ||| |||| | Sbjct 482 GCCGGACACCAG--GTGCCGGGTCTTGGGGTGCTCCGGCGCGCCGAAGCTCAGCGCGTTC 425 Query 42827 ATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCC 42886 | | |||| |||||| |||||||||| || | |||||| | ||||||||| || || Sbjct 424 AGGCAGGCGATCGGGCGCGCGCCCATGGTGAA-ACGTCGCGCAGGATGCCGCC-ACGCCG 367 Query 42887 GTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAAC 42946 |||||||||||||| ||||||||||| | ||||||||||| |||||| |||||| Sbjct 366 GTCGCCGCGCCCTGATAGGGCTCGATGTAGCTCGGGTGGTTGTGGCTCTCCATCTTGAAG 307 Query 42947 GTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATG 43006 || ||| || ||||||| |||||| ||||| || |||| ||| ||| || | Sbjct 306 ACCACGGCCTGGCCGTCGCCGATGTCGATCACGCCGGCATTCTCGCCCGGGCCG--CA-G 250 Query 43007 AGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTC 43066 | || | | | | | | || || | | |||| || | || |||| Sbjct 249 ATTACCTGGGG------GCCGGTG---GTCGGC---AGCTTCTTCAGATGGATGCGGCTC 202 Query 43067 GACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTG 43126 ||||||||| ||| ||||| ||||||||||||||| | || | |||||| | |||| Sbjct 201 GACTTGTAGCTGCAATGCTCGGACCACATCACCGAGAAGATGCCGAGCTCGGTC-AGGTT 143 Query 43127 GGGC-GGCGGCC 43137 |||| |||||| Sbjct 142 GGGCTCGCGGCC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148220238309214