Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14858 116 9e-21 seq14857 114 3e-20 >seq14858 Length=1827956 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || |||||||| || || || || || || Sbjct 1581104 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAA 1581045 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || ||||| || Sbjct 1581044 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580985 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 1580984 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580925 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1580924 AAGATCTGCATT 1580913 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || ||||| || || || || || || || Sbjct 1580247 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 1580188 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || ||||| || Sbjct 1580187 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580128 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 1580127 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580068 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 1580067 AAGATCTGCATTTTG 1580053 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || ||||| || || || || || || || Sbjct 1580876 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 1580817 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || ||||| || Sbjct 1580816 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580757 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 1580756 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580697 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1580696 AAGATCTGCATT 1580685 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || ||||| || || || || || || || Sbjct 1581628 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 1581569 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || ||||| || Sbjct 1581568 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1581509 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 1581508 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACA 1581449 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1581448 AAGATCTGCATT 1581437 >seq14857 Length=2032611 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || | ||||| || | || || |||||||| Sbjct 1173521 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 1173462 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||||||| || | || ||||| || |||||||| || || || || || || Sbjct 1173461 GATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 1173402 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | || || || | ||||||||||| ||||| || ||||| || Sbjct 1173401 TTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 1173342 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 1173341 GAAAATCTGCATTTTG 1173326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179429786060758