Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq2293 307 4e-79 >seq2293 Length=1342 Score = 307 bits (340), Expect = 4e-79 Identities = 481/686 (70%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||||||||||| || ||||| |||| ||| || ||||| ||||| || || ||||| || Sbjct 658 ATGGCTTACACCACATTTTCTCAAAACAAAAACAACCAGTTACTGGAACCGATGTTTTTC 717 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976 |||||| ||||||||||| || | || || || || | | || ||||| || | Sbjct 718 GGTCAGTCGGTTAACGTTGCGCGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTG 777 Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036 ||||||||||| |||| ||||||||||| || ||||| || ||||| |||| |||||| Sbjct 778 ATTGAGAAACAGCTGTCTTTCTTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGT 837 Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096 ||||| |||||| || || | | || |||||||||||| ||| ||||| || Sbjct 838 ATTGACTATCAGGCACTGCCGGATCATGAGAAACACATTTTCATCAGCAATCTGAAATAC 897 Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156 |||| || | || || |||||||| || | || ||| | ||| | || | | Sbjct 898 CAGACGCTGTTGGATTCGATTCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCTGATC 957 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 || || ||| |||| || ||| | ||||||||||| ||||||||||| || || || Sbjct 958 TCAATCCCGGAACTGGAAACCTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCC 1017 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAA 52276 |||||||||||||| || || |||||||| || | || || || | |||||||| Sbjct 1018 CGTTCTTATACCCATATTATCCGTAATATCGTCAACGATCCGGCGATCGTATTTGATGAT 1077 Query 52277 ATCGTAACTAACGAACACATC--AAGGCACGAGCAATTGGCATCTCCCAATATTATGACG 52334 ||||| || |||||| | ||| | || || | || | ||| ||| || || |||| Sbjct 1078 ATCGTCACCAACGAAGAGATCCTCAAGCGCGCGAAA--GACATTTCCGGCTACTACGACG 1135 Query 52335 AACTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCA-- 52392 | || | | || | | || || | || ||||| | || | ||||| Sbjct 1136 ATCTGATCGAGATGACAAGCTACTACCACCTGCTGGGTGAAGGCACACA-CCAGGTCAAC 1194 Query 52393 ----------TGA-AATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATG 52441 ||| || || ||||||| | |||| ||| |||| ||| | ||||| ||| Sbjct 1195 GGTAAAACCGTGACCATCAGCCTGCGTGCGCTGAAAAAGCAGCTTTATCTGTGCCTGATG 1254 Query 52442 TCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTC 52501 | |||| ||||||||||| || ||||||||||||||||| || || ||||| ||||| Sbjct 1255 AGTGTCAACGCATTGGAAGCGATCCGCTTCTATGTCAGCTTCGCCTGTTCATTCGCCTTT 1314 Query 52502 GCAGAACGTAAGTTAATGGAAGGAAA 52527 || |||||| | | |||||||| || Sbjct 1315 GCGGAACGTGAACTGATGGAAGGCAA 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169368505523234