Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14564 165 8e-36 seq14858 104 2e-17 seq14857 100 3e-16 seq21 82.4 8e-11 >seq14564 Length=527 Score = 165 bits (182), Expect = 8e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 27464 GTCGTCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGC 27523 || |||| | | || ||||| |||||||| || |||||||||||||| ||| || Sbjct 267 GTGGTCGGCTCTTATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGATAAG 326 Query 27524 GTACCGGCGCCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGAC 27583 | ||||||| |||||| | ||||| || |||||||| | ||||| || ||||| || Sbjct 327 CTGCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGAT 386 Query 27584 GGCATCAACGACAGCCTTAAAACTATTCCGGGTAGTTTCGAAGCGTTGCAAAAGTCGTGC 27643 |||||||||||||| || ||| || ||||| ||| | |||||||| || ||| Sbjct 387 GGCATCAACGACAGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGC 446 Query 27644 GCGGGTCGTGAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACCA 27703 ||| ||||| ||||||||||| | || |||||||||| || || ||||| ||| Sbjct 447 CAGGGCCGTGAGGACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGC 506 Query 27704 CAAAAAGGCGTTTCGGCTTGG 27724 ||||| |||||| | || ||| Sbjct 507 CAAAAGGGCGTTACCGCCTGG 527 >seq14858 Length=1827956 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | | || || |||| || | ||||||||| Sbjct 1580253 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1580194 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| || || ||||| ||||| || || || || ||| ||| Sbjct 1580193 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580134 Query 64367 ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || |||| || || || | || | |||||| ||||| | ||| Sbjct 1580133 ACATTCTCGATGGTGTCTGACGGC-TCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGT 1580075 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || || || || |||||||| Sbjct 1580074 CTTCACAAAGATCTGCATTTT 1580054 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | | || || ||||||| | ||||||||| Sbjct 1581110 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCA 1581051 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| || || ||||| ||||| || || || || ||| ||| Sbjct 1581050 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580991 Query 64367 ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || |||| || || || | || | |||||| ||||| | ||| Sbjct 1580990 ACATTCTCGATGGTGTCTGACGGC-TCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGT 1580932 Query 64426 TTTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 1580931 CTTCACAAAGATCTGCATT 1580913 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | | || || |||| || | ||||||||| Sbjct 1580882 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1580823 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| || || ||||| ||||| || || || || ||| ||| Sbjct 1580822 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1580763 Query 64367 ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || |||| || || || | || | |||||| ||||| | ||| Sbjct 1580762 ACATTCTCGATGGTGTCTGACGGC-TCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGT 1580704 Query 64426 TTTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 1580703 CTTCACAAAGATCTGCATT 1580685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || ||||||||||| || | | || || |||| || | ||||||||| Sbjct 1581634 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCA 1581575 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || |||||||| || || ||||| ||||| || || || || ||| ||| Sbjct 1581574 GCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTC 1581515 Query 64367 ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || |||| || || || | || | ||||| ||||| | ||| Sbjct 1581514 ACATTCTCGATGGTGTCTGACGGC-TCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGT 1581456 Query 64426 TTTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 1581455 CTTCACAAAGATCTGCATT 1581437 >seq14857 Length=2032611 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| | |||| || ||||||||||| Sbjct 1173526 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCT 1173467 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || |||||||| || || || || || || ||| Sbjct 1173466 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 1173407 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| | || || || | ||| | ||||||||||| | || Sbjct 1173406 ACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTC 1173347 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||| |||||||| Sbjct 1173346 TTCACGAAAATCTGCATTTT 1173327 >seq21 Length=852027 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 154584 ACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCG 154643 || || ||||||||||| || || | || || || |||| | || | ||||| | Sbjct 417982 ACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGACTTCTGTG 417923 Query 154644 CACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCG 154703 ||||| || |||||| || || |||| ||| ||||| || || ||||| ||| Sbjct 417922 CACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCG 417863 Query 154704 TCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 |||||||||| |||||||| |||||||| || | ||| Sbjct 417862 TCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTG 417825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499551984732840