Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq3867 98.7 1e-15 >seq3867 Length=961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 233/347 (67%), Gaps = 14/347 (4%) Strand=Plus/Plus Query 25025 GTGGAAGAGCGTGTTGTCCAACAAGGGGCTGCTCGCTATTCTGTGGGAGCTGTATCCGGA 25084 |||||| ||| | | |||||||||| ||||| | || ||||||| ||| ||||| Sbjct 67 GTGGAAAAGCATTATCTCCAACAAGGCACTGCTGCCGATGTTGTGGGAAATGTTCCCGGA 126 Query 25085 CCACCCGAACCTGCTGCCTGCATACCTTG-GCGACCCGCGCACGCTCACATC-----TTA 25138 ||||||||||||||||| |||||| ||| | | ||||||| | || || || Sbjct 127 TCACCCGAACCTGCTGCCGGCATACTTTGCACAAGACGCGCACCCACAGCTCGATCACTA 186 Query 25139 CGCTAAGAAGCCGCTGTTCTCGCGCGAAGGTGCGAACATCGAACTGTGGGACAACGATCG 25198 || | ||||| |||||||| |||||||| || || ||| | | | | |||| || Sbjct 187 CGTGACCAAGCCACTGTTCTCACGCGAAGGCGCCAATATCCAGATCGTGCAAAACGGTCA 246 Query 25199 CGTGGTGGC---CGCTGACCGCGGTCCGTACGGTGCGGAAGGCCACGTCTATCAGCAGTT 25255 | || || || ||| ||| || ||||||| |||||| || |||||||| Sbjct 247 GGAAGTTGCACGCGTTGA---CGGCCCTTACGGTGAAGAAGGCATGATCGTGCAGCAGTT 303 Query 25256 GGCGCCGTTGCCCAACTTCGATGGGAACTATCCAGTCATCGGTTCGTGGATAGTGGGC-A 25314 ||| | || | ||||| || | |||| | | ||||| ||| | || | | | Sbjct 304 CCACCCGCTACCACAGTTCGAAGGCAGCTATACGCTGATCGGCAGCTGGCTGGTTGACGA 363 Query 25315 GCGAGGCTGCTGGCATCTGTGTGCGCGAAGACAACCAGTTGATCACC 25361 | | |||| || ||| || |||| |||||| | | |||||||| Sbjct 364 TCAACCCTGC-GGTATCGGTCTGCGTGAAGACCGCGAACTGATCACC 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739750556555400