Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_011055.1 Length=76312 Score E Sequences producing significant alignments: (Bits) Value seq5757 113 2e-20 >seq5757 Length=557 Score = 113 bits (124), Expect = 2e-20 Identities = 318/482 (66%), Gaps = 11/482 (2%) Strand=Plus/Minus Query 65238 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 65297 ||| || ||||| || | ||||| || | || || || ||| || || || |||| Sbjct 536 CATTGATGCTGAACATGCGCTGGATCCGGTATATGCGAAAAAGCTGGGCGTTGATATCGA 477 Query 65298 CAACCTCGTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCC 65356 |||||| || || | |||||| || || || ||||| || |||| ||| |||| | Sbjct 476 CAACCTGCTG-TGTTCTCAGCCAGATACGGGTGAGCAAGCATTGGAAATCTGTGACGCCT 418 Query 65357 TCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 65416 | | ||||||| | | | || |||||||||| || || || || ||| Sbjct 417 TAACCCGCTCTGGCGCGGTTGATGTGATCATCGTTGACTCCGTAGCAGCGTTGACGCCAA 358 Query 65417 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 65476 || || |||||||||| ||||| ||| ||| | |||||| || || | ||| Sbjct 357 AAGCAGAAATCGAAGGCGAAATCGGTGACTCACACATGGGCCTGGCGGCACGTATGATGA 298 Query 65477 CGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 65536 ||||| ||||| || || | || | | | | | ||||||||||| | ||| Sbjct 297 GCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACGCCAACACGCTGCTGATCTTCA 238 Query 65537 TCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAACGAGACCACCA 65593 |||||||| | || |||||| || | | ||||| |||| || ||||||| Sbjct 237 TCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCTA--ACCCG---GAAACCACCA 183 Query 65594 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 65653 | || || || || ||| ||||||||||| || || |||| ||||||| || | | Sbjct 182 CCGGTGGTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCG 123 Query 65654 CCGAGAAGGAA-GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 65712 | | ||| ||| ||||| | | || || | | ||||| ||||| || || |||||| Sbjct 122 CGGTGAAAGAAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAAC 63 Query 65713 AA 65714 || Sbjct 62 AA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244029393770933